Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24030 367 / 2e-124 SLAH3 SLAC1 homologue 3 (.1) AT4G27970 329 / 5e-111 SLAH2 SLAC1 homologue 2 (.1) AT1G12480 247 / 1e-78 SLAC1, RCD3, CDI3, OZS1 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1) AT1G62280 162 / 7e-48 SLAH1 SLAC1 homologue 1 (.1) AT1G62262 158 / 3e-46 SLAH4 SLAC1 homologue 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G035300 [exp] 270 / 5e-92 AT5G24030 172 / 1e-50 SLAC1 homologue 3 (.1) Potri.001G114300 [exp] 180 / 7e-55 AT1G12480 432 / 4e-149 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1) Potri.008G084901 [exp] 69 / 2e-14 AT1G62280 117 / 3e-32 SLAC1 homologue 1 (.1) Potri.010G170050 [exp] 63 / 3e-12 AT1G62280 136 / 7e-39 SLAC1 homologue 1 (.1) Potri.002G227800 [exp] 0 / 1 AT1G62280 120 / 7e-31 SLAC1 homologue 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027553 [exp] 408 / 2e-140 AT5G24030 669 / 0.0 SLAC1 homologue 3 (.1) Lus10039312 [exp] 405 / 4e-139 AT5G24030 670 / 0.0 SLAC1 homologue 3 (.1) Lus10006678 [exp] 242 / 2e-76 AT1G12480 734 / 0.0 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1) Lus10007023 [exp] 240 / 3e-76 AT1G12480 720 / 0.0 SLOW ANION CHANNEL-ASSOCIATED 1, RADICAL-INDUCED CELL DEATH 3, OZONE-SENSITIVE 1, CARBON DIOXIDE INSENSITIVE 3, C4-dicarboxylate transporter/malic acid transport protein (.1) Lus10024306 [exp] 161 / 2e-47 AT1G62280 349 / 7e-119 SLAC1 homologue 1 (.1) Lus10015133 [exp] 157 / 2e-45 AT1G62280 387 / 6e-133 SLAC1 homologue 1 (.1) Lus10031545 [exp] 82 / 3e-19 AT1G62280 160 / 3e-48 SLAC1 homologue 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03595 [poplar] [flax] SLAC1 Voltage-dependent anion channel
Representative CDS sequence Show only first row Show all	>Potri.015G026700.1 pacid=42776172 polypeptide=Potri.015G026700.1.p locus=Potri.015G026700 ID=Potri.015G026700.1.v4.1 annot-version=v4.1 ATGTCAGGAGGACAGAGAAGGCTTTCGAAGGTGGCAAATCCTACAAACCATCTGTCGATTGTTGGGAACTTTGTGGGGGCACTGTTGGGTGCATCGATGG GATTAAAAGAAGGGCCTATATTCTTCTTTGCAGTCGGTTTGGCTCACTATACAGTCCTATTTGTAACTTTGTACCAGAGACTTCCGACAAATGAGACAAT CCCCGAGGAGCTCCATCCAGTTTTCTTTCTGTTTGTTGCAGCTCCAAGTGTTGCTTCTATGGCATGGGCAAATATTCAAGGTTCATTTGATCATGGATCA CGGATTCCTTACTTCATTGCCCTGTTCCTTTATTTATCATTGGCAGTCCGTGTTAATTTTTTCCGAGGATTCAAGTTTTCATTGTCATGGTGGGCATACA CTTTCCCGATGACCGGCGCTGCCATTGCGACCATCAGGTACTCGAATGAAGTCACGAATGTAGTCACCCAAGTTCTTGCCGTCATATTCTCTACTGTTTC CACACTCACTGTATCGGCTCTCCTTGTATCGACAATAGTGCACGCATTCGTACTCCAGGACCTCTTCCCTAATGACATTGCCATCGCTATCAGCAACAGG AAACCAAGACAGCATCACCAAAGGAAGTGGTTCCATCTAAGACGTGGAAGCTCGGTTGAAAAAGAGATTGAACATTACTTAAAGTTCACAAACTCAGATG GTAAGGATATAGAATCTTCTCTAGACCCCACCACTTCTAGCTCAGATAGTAGTCATTGA
AA sequence Show only first row Show all	>Potri.015G026700.1 pacid=42776172 polypeptide=Potri.015G026700.1.p locus=Potri.015G026700 ID=Potri.015G026700.1.v4.1 annot-version=v4.1 MSGGQRRLSKVANPTNHLSIVGNFVGALLGASMGLKEGPIFFFAVGLAHYTVLFVTLYQRLPTNETIPEELHPVFFLFVAAPSVASMAWANIQGSFDHGS RIPYFIALFLYLSLAVRVNFFRGFKFSLSWWAYTFPMTGAAIATIRYSNEVTNVVTQVLAVIFSTVSTLTVSALLVSTIVHAFVLQDLFPNDIAIAISNR KPRQHHQRKWFHLRRGSSVEKEIEHYLKFTNSDGKDIESSLDPTTSSSDSSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24030		SLAH3	SLAC1 homologue 3 (.1)		Potri.015G026700 [exp]	0	1
AT4G04630			Protein of unknown function, D...		Potri.004G014000 [exp]	10.95	0.8253
AT4G09890			Protein of unknown function (D...		Potri.007G077500 [exp]	10.95	0.8343
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Potri.009G114300 [exp]	11.40	0.8177
AT3G47570			Leucine-rich repeat protein ki...		Potri.010G228300 [exp]	15.49	0.8316
AT1G43650			nodulin MtN21 /EamA-like trans...		Potri.005G192100 [exp]	19.87	0.8254
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.019G014405 [exp]	23.97	0.7916
AT4G31330			Protein of unknown function, D...		Potri.006G278000 [exp]	29.73	0.7894
AT3G19340			Protein of unknown function (D...		Potri.014G144500 [exp]	29.84	0.7514
AT3G28960			Transmembrane amino acid trans...		Potri.008G086500 [exp]	30.46	0.8181
					Potri.016G098300 [exp]	31.19	0.8207

Compare expression of checked genes

Potri.015G026700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.