Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52882 1146 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G28000 1137 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G64110 1113 / 0 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT1G02890 508 / 5e-164 AAA-type ATPase family protein (.1.2) AT4G02480 482 / 7e-154 AAA-type ATPase family protein (.1) AT4G24860 447 / 6e-142 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G62130 386 / 1e-119 AAA-type ATPase family protein (.1) AT1G50140 375 / 6e-116 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G19740 373 / 3e-115 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G27680 276 / 4e-85 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G035400 [exp] 1437 / 0 AT5G52882 1137 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G097600 [exp] 1145 / 0 AT1G64110 1159 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.003G133700 [exp] 1121 / 0 AT1G64110 1145 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.012G096300 [exp] 501 / 5e-161 AT4G02480 1153 / 0.0 AAA-type ATPase family protein (.1) Potri.014G131000 [exp] 499 / 2e-160 AT1G02890 1432 / 0.0 AAA-type ATPase family protein (.1.2) Potri.002G205900 [exp] 489 / 5e-157 AT1G02890 1445 / 0.0 AAA-type ATPase family protein (.1.2) Potri.015G094100 [exp] 486 / 2e-155 AT4G02480 1128 / 0.0 AAA-type ATPase family protein (.1) Potri.005G093300 [exp] 358 / 2e-109 AT3G19740 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G069800 [exp] 358 / 4e-109 AT1G50140 1215 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027551 [exp] 1172 / 0 AT5G52882 1136 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10039309 [exp] 1171 / 0 AT5G52882 1140 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024692 [exp] 1089 / 0 AT1G64110 1176 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10028752 [exp] 1066 / 0 AT1G64110 1165 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10017535 [exp] 1059 / 0 AT1G64110 1157 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10010282 [exp] 464 / 5e-147 AT4G02480 1408 / 0.0 AAA-type ATPase family protein (.1) Lus10036347 [exp] 457 / 2e-144 AT4G02480 1395 / 0.0 AAA-type ATPase family protein (.1) Lus10010204 [exp] 391 / 8e-122 AT3G19740 1242 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017405 [exp] 381 / 7e-118 AT3G19740 1223 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013429 [exp] 365 / 6e-111 AT1G50140 1151 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF05496 [poplar] [flax] RuvB_N Holliday junction DNA helicase RuvB P-loop domain
Representative CDS sequence Show only first row Show all	>Potri.015G026900.1 pacid=42775662 polypeptide=Potri.015G026900.1.p locus=Potri.015G026900 ID=Potri.015G026900.1.v4.1 annot-version=v4.1 ATGGAACAGAAGCATATGTTGTTGTCTGCTTTGAGTGTTGGAGTTGGGGTCGGTATGGGGCTAGGATTGGCCTCTGGACAAAAAGTAAGCAGGTGGGCTG GTGGATGTGGCTCAATAGATGGTGTCACGGCTGAGCAGATTGAGCAAGAGTTGATGAGGCAGGTTGTTGATGGAAGAGACAGCAAGGTCACATTTGAGGA GTTCCCTTATTATCTCAGTGAGAAAACTCGAATGTTATTAACAAGTGCGGCATTTGTTCATTTAAAGCATGCTGACTTTTCCAAGCACACCCGGAATCTT TCTCCTGCTAGTAGAGCGATTTTGCTCTCAGGACCTGCTGAGTTTTATCACCAAATGCTTGCGAAGGCTTTAGCACATAACTTTGAATCAAAGCTGCTGT TGTTGGATGTTAGTGACTTTTCCATGAAGATGCAAAGCAAATATGGATGCAGTAAAAAAGAATATTCTTTCAAGAGGTCCATTTCTGGGGTGACATTGGA ACGAATGTCCTCTCTGTTTGGTTCTTTCTCAATCCTTTCTCCAAAGGAAGAAACAAGGGGTAAGGAAGGGTCTAGTAATTCTCCCAAACTTCGCAGAAAC ACCTCCACCGCTTCTGATATGAGTAGTATGACTTCACAGTCCTCTTCCATGAATCCAGCTCCTCTCAAGCACACAAGCAGTTGGTGTTTTGATGAGAACC TATTTTTGCAATCACTTTACCAGGTATTGGTTTCAGTATCAGAAAGAAGTTCCATCATTTTATACCTTAGGGATGCTGAGAAGCTGCTTCTTCAATCACA AAGGATGTACAACTTGCTCGATAAGTTGTTGAAGAAACTCTCAGGTAATGTGTTGATACTTGGTTCCCGGATGTTGGACCAAGAAGATGATTGCAAAGAA GCGGATGAAAGGCTCGCAATGTTATTCCCATACAACATTGAGATCAAACCACCAGAAGATGAGATTCATCTTGTCAGCTGGAAAGCCCAACTGGAAGAGG ACATGAAGAAGATTCAGTTTCAAGATAACAAAAACCACATTGCTGAGGTGCTTGCGGCAAATGATATTGAATGCGATGGTTTGAGTTCTATTTGCCATGG AGACACAATGGTTCTTAGCAATTATATTGAAGAAATCGTGGTATCAGCAATCTCATATCATCTGATGAATAATAAGGATCCGGAATACCGAAATGGAAAG CTTCTTATATCATCTAAGAGCTTGTCACATGGATTGAGTATATTCCAAGAAGGTAAAAGTGACGGGAAAGATACACTAAAACTAGAGACTAATGCCGAAG CTGGCAAGGAAGCTGAAGGGGAAGAGGCTGTTGGTGCAAAGAATAATAGTAAGACTGAAAAAGAGAAATCTGTTACTGGCGCGAAGAAGGACAGCGAGAA TCAACCTAAAGCCCCTGAAGTTCCTCCTGACAATGAGTTTGAGAAACGAATCAGACCAGAGGTTATCCCTGCAAATGAGATTGGAGTAACATTTGCAGAT ATTGGTGCCTTGGATGAAACCAAAGAATCACTTCAGGAGCTTGTCATGCTGCCTCTTCGGAGGCCAGACCTCTTCAATGGTGGGCTTCTCAAGCCATGTA GAGGTATATTGCTATTTGGTCCACCTGGAACAGGAAAAACAATGCTGGCAAAAGCTATAGCCAAAGAAGCCGGAGCAAGTTTCATAAATGTCTCAATGTC CACCATTACTTCAAAATGGTTTGGTGAAGACGAGAAGAACGTTCGAGCTCTGTTCACACTTGCTGCAAAGGTTTCCCCGACTATCATATTTGTGGATGAG GTTGATAGCATGCTAGGGCAGCGGACTAGAGTTGGTGAGCATGAGGCCATGCGGAAGATTAAGAATGAGTTTATGACTCACTGGGATGGACTGTTGACAA AACCTGGTGAGCGTATTCTTGTCCTTGCAGCGACCAACAGGCCATTTGACCTTGATGAAGCAATTATTAGGCGGTTTGAGCGCAGAATTATGGTTGGTCT TCCATCTATTGAGAGCAGGGAAAGGATTTTGAAAACTCTCATGTCAAAAGAAAAAACAGAAGATCTAGACTTCAAGGAGCTTGCAACCATGACAGAAGGG TATACTGGAAGTGATCTTAAGAACCTGTGTGTCACAGCAGCATATCGACCAGTTAGAGAGCTTTTACAGCAGGAGCGAGTGAAGGATAAGGAAAAGAAGC AGAAAGCTGAAGAAGGCACAAGCTCAGAAGATGCTGCAGATACAAAGGAAGAAGGGAAAGAGGAAAGCGTGATCATTCTAAGGCCGTTAAACATGGATGA TATGAGACAGGCAAAGAATCAGGTTGCTTCAAGTTTCGCAACTGAGGGTACGGTAATGAATGAGCTAAAGCAATGGAATGAGTTGTATGGCGAAGGGGGT TCAAGAAAGAAGCAACAGTTAACTTACTTCCTCTAG
AA sequence Show only first row Show all	>Potri.015G026900.1 pacid=42775662 polypeptide=Potri.015G026900.1.p locus=Potri.015G026900 ID=Potri.015G026900.1.v4.1 annot-version=v4.1 MEQKHMLLSALSVGVGVGMGLGLASGQKVSRWAGGCGSIDGVTAEQIEQELMRQVVDGRDSKVTFEEFPYYLSEKTRMLLTSAAFVHLKHADFSKHTRNL SPASRAILLSGPAEFYHQMLAKALAHNFESKLLLLDVSDFSMKMQSKYGCSKKEYSFKRSISGVTLERMSSLFGSFSILSPKEETRGKEGSSNSPKLRRN TSTASDMSSMTSQSSSMNPAPLKHTSSWCFDENLFLQSLYQVLVSVSERSSIILYLRDAEKLLLQSQRMYNLLDKLLKKLSGNVLILGSRMLDQEDDCKE ADERLAMLFPYNIEIKPPEDEIHLVSWKAQLEEDMKKIQFQDNKNHIAEVLAANDIECDGLSSICHGDTMVLSNYIEEIVVSAISYHLMNNKDPEYRNGK LLISSKSLSHGLSIFQEGKSDGKDTLKLETNAEAGKEAEGEEAVGAKNNSKTEKEKSVTGAKKDSENQPKAPEVPPDNEFEKRIRPEVIPANEIGVTFAD IGALDETKESLQELVMLPLRRPDLFNGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDE VDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSIESRERILKTLMSKEKTEDLDFKELATMTEG YTGSDLKNLCVTAAYRPVRELLQQERVKDKEKKQKAEEGTSSEDAADTKEEGKEESVIILRPLNMDDMRQAKNQVASSFATEGTVMNELKQWNELYGEGG SRKKQQLTYFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52882			P-loop containing nucleoside t...		Potri.015G026900 [exp]	0	1
AT2G39570		ACR9	ACT domain repeats 9, ACT doma...		Potri.010G207700 [exp]	1.41	0.7722
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Potri.016G020000 [exp]	16.97	0.6681
AT1G30760			FAD-binding Berberine family p...		Potri.006G128900 [exp]	18.11	0.7032
AT5G63530		ATFP3	ARABIDOPSIS THALIANA FARNESYLA...		Potri.012G101400 [exp]	23.23	0.6943
AT1G04300			TRAF-like superfamily protein ...		Potri.008G163300 [exp]	24.69	0.7156
AT4G24240	WRKY	ATWRKY7, WRKY7	WRKY DNA-binding protein 7 (.1...		Potri.005G141400 [exp]	24.97	0.6526	Pt-WRKY15.2
AT1G70950			TPX2 (targeting protein for Xk...		Potri.010G113000 [exp]	26.07	0.6771
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Potri.007G135100 [exp]	31.46	0.6822
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Potri.012G055700 [exp]	34.29	0.6916
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Potri.002G037500 [exp]	34.98	0.6610

Compare expression of checked genes

Potri.015G026900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.