Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52870 91 / 3e-20 MAKR5 MEMBRANE-ASSOCIATED KINASE REGULATOR 5, unknown protein AT1G64080 58 / 4e-09 MAKR2 MEMBRANE-ASSOCIATED KINASE REGULATOR 2, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G035700 [exp] 430 / 4e-151 AT5G52870 115 / 2e-29 MEMBRANE-ASSOCIATED KINASE REGULATOR 5, unknown protein Potri.001G098000 [exp] 88 / 6e-19 AT1G64080 145 / 8e-39 MEMBRANE-ASSOCIATED KINASE REGULATOR 2, unknown protein Potri.003G133500 [exp] 88 / 7e-19 AT1G64080 147 / 2e-39 MEMBRANE-ASSOCIATED KINASE REGULATOR 2, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017532 [exp] 79 / 1e-15 AT1G64080 175 / 1e-49 MEMBRANE-ASSOCIATED KINASE REGULATOR 2, unknown protein Lus10028754 [exp] 67 / 7e-12 AT1G64080 185 / 1e-53 MEMBRANE-ASSOCIATED KINASE REGULATOR 2, unknown protein Lus10039306 [exp] 58 / 4e-09 AT5G52870 54 / 5e-08 MEMBRANE-ASSOCIATED KINASE REGULATOR 5, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G027500.1 pacid=42775701 polypeptide=Potri.015G027500.1.p locus=Potri.015G027500 ID=Potri.015G027500.1.v4.1 annot-version=v4.1 ATGGAAGCTCTCTACTTCCTCAAGTTCTGGAGACCCACCACCACCACCACCACCACCAACACTCATAAAGAAAACCGACCCTCTAGTGGAAGCAGTGATG ACACCACCGAGATCCCATTCACAGATTATGAATTTGAAGATGGAGAAGACTCGTTTTTTGAATTGGAACTTACTGTGCCTGATTTTGACACCAATAAATG CGGCAGCAACAACACCACCAACATCAACAACAACCCACTAGACAAAGAAAGCAACGTCTTTGACTCTAAACAAGCGCCTCTCCACAAATTAGTTGACAAA GAGAGCCACAACCCTCAACACACATTTCAGCAGCCAACGCTTTCAACCGATCATCTCCTTTCAAAGAGAAAAATCCTCCCTATCGAACCCATTTCTTCAT CAAAACCTCAGTCACCAATCTCCTTGCTAAAATCAGCTCCAAGGTTTAAAGTCCTCATGTTCAAGAAATCAAAGTCAATGGCATCACAGAAAACAGAGAA AACAGGGGAAACGGAGTCCTTCAATGCAAATAGCAAAAAACACGAAAGCAACAAGTTTTTTACTGTCAAACTCAAGCTTGAAGAGGTTACGAACGCTTCT TTTTTCACTAAACAAAACAGCTTGAGGAAGCAATTCGCTAATGATTCTTATGATAATGATACATCAAAGAGATTTTCAAAGGAAGTGATACAAAAGTACT TAAAGCTAATCAAGCCATTATACATCAAAGTTTCCAAGAGACAAAGCGACAAGATGAGATTCTCCGGTGAGTTATCAGTTGGGTCTCCATCATCTTCCTC AGCAACGGTGCCGGCAAAGGAAAAGCAGGGGAGTTTTCCTGCAGGGATTAGAGTGGTTTCTAGGCATCTTGGGAAGAGCAAATCAGCTTCAGCGACCACA GGAGTTTCTCCTCCAATTGGGAGCAGGAGAGATGATTCTTTGCTGCTGCAGAATGATGGGATTCAAAGTGCTATCCTGCATTGCAAGAAATCTTTCAATT CTTCTAGAGATTCTTCTTTAATGTCAAGATTTTCAAGTGACCCTTTGCACGAGAAATCAATGGCTTCACCAAGAATTTCATCAAGTGAAGAGAAAGCAAC CAATTAA
AA sequence Show only first row Show all	>Potri.015G027500.1 pacid=42775701 polypeptide=Potri.015G027500.1.p locus=Potri.015G027500 ID=Potri.015G027500.1.v4.1 annot-version=v4.1 MEALYFLKFWRPTTTTTTTNTHKENRPSSGSSDDTTEIPFTDYEFEDGEDSFFELELTVPDFDTNKCGSNNTTNINNNPLDKESNVFDSKQAPLHKLVDK ESHNPQHTFQQPTLSTDHLLSKRKILPIEPISSSKPQSPISLLKSAPRFKVLMFKKSKSMASQKTEKTGETESFNANSKKHESNKFFTVKLKLEEVTNAS FFTKQNSLRKQFANDSYDNDTSKRFSKEVIQKYLKLIKPLYIKVSKRQSDKMRFSGELSVGSPSSSSATVPAKEKQGSFPAGIRVVSRHLGKSKSASATT GVSPPIGSRRDDSLLLQNDGIQSAILHCKKSFNSSRDSSLMSRFSSDPLHEKSMASPRISSSEEKATN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52870		MAKR5	MEMBRANE-ASSOCIATED KINASE REG...		Potri.015G027500 [exp]	0	1
AT4G32570	ZIM	TIFY8	TIFY domain protein 8 (.1)		Potri.006G247500 [exp]	2.23	0.7527
AT1G63930		ROH1	from the Czech 'roh' meaning '...		Potri.001G099700 [exp]	5.65	0.7218
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Potri.001G114900 [exp]	6.48	0.7467
AT4G10550			Subtilase family protein (.1.2...		Potri.001G455800 [exp]	7.48	0.7581
AT5G46295			unknown protein		Potri.011G079900 [exp]	8.00	0.7862
AT1G32960		ATSBT3.3	Subtilase family protein (.1)		Potri.001G450600 [exp]	12.96	0.7275
AT5G20060			alpha/beta-Hydrolases superfam...		Potri.018G030200 [exp]	17.54	0.6931
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Potri.008G105500 [exp]	23.02	0.6070
AT1G01490			Heavy metal transport/detoxifi...		Potri.014G089700 [exp]	24.69	0.7049
AT4G16400			unknown protein		Potri.006G017900 [exp]	26.49	0.6947

Compare expression of checked genes

Potri.015G027500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.