Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16520 339 / 3e-112 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3) AT4G01070 268 / 2e-84 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G01420 254 / 6e-79 UGT72B3 UDP-glucosyl transferase 72B3 (.1) AT1G01390 252 / 3e-78 UDP-Glycosyltransferase superfamily protein (.1) AT3G50740 231 / 3e-70 UGT72E1 UDP-glucosyl transferase 72E1 (.1) AT2G29740 227 / 6e-69 UGT71C2 UDP-glucosyl transferase 71C2 (.1) AT4G15280 223 / 4e-67 UGT71B5 UDP-glucosyl transferase 71B5 (.1) AT1G07260 222 / 8e-67 UGT71C3 UDP-glucosyl transferase 71C3 (.1) AT3G21750 221 / 2e-66 UGT71B1 UDP-glucosyl transferase 71B1 (.1) AT1G07240 221 / 3e-66 UGT71C5 UDP-glucosyl transferase 71C5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G027800 [exp] 846 / 0 AT3G16520 355 / 1e-118 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.012G035800 [exp] 567 / 0 AT3G16520 387 / 5e-131 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.012G036000 [exp] 559 / 0 AT3G16520 385 / 1e-130 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G069600 [exp] 414 / 4e-141 AT3G16520 498 / 2e-174 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G069800 [exp] 407 / 1e-138 AT3G16520 496 / 7e-174 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G071000 [exp] 406 / 4e-138 AT3G16520 485 / 2e-169 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G070000 [exp] 406 / 5e-138 AT3G16520 474 / 4e-165 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G070900 [exp] 405 / 9e-138 AT3G16520 478 / 2e-166 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.017G150100 [exp] 401 / 4e-136 AT3G16520 451 / 9e-156 UDP-glucosyl transferase 88A1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039302 [exp] 436 / 5e-150 AT3G16520 393 / 2e-133 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10039301 [exp] 417 / 3e-142 AT3G16520 481 / 9e-168 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10027542 [exp] 368 / 3e-123 AT3G16520 431 / 3e-148 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10005950 [exp] 263 / 3e-82 AT4G01070 573 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029452 [exp] 259 / 1e-80 AT4G01070 582 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029453 [exp] 258 / 1e-80 AT4G01070 515 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005951 [exp] 252 / 4e-78 AT4G01070 510 / 5e-179 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10026795 [exp] 244 / 2e-75 AT3G21750 448 / 5e-155 UDP-glucosyl transferase 71B1 (.1) Lus10036086 [exp] 241 / 7e-74 AT3G21760 431 / 2e-147 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10001906 [exp] 239 / 3e-73 AT4G01070 431 / 1e-147 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.015G027700.1 pacid=42774928 polypeptide=Potri.015G027700.1.p locus=Potri.015G027700 ID=Potri.015G027700.1.v4.1 annot-version=v4.1 ATGGAGGATACCATAGTCTTGTACCCATCACCTGGCAGAGGCCACTTATTCTCTATGGTGGAACTAGGAAAGCAAATTCTCGAACACCACCCTTCAATCT CAATTACAATCATAATCTCCGCCATGCCAACTGAATCAATCTCCATTGATGACCCCTACTTTTCCACACTCTGCAACACCAATCCCTCCATAACTCTTAT TCACCTCCCTCAAGTTTCTCTCCCTCCCAACACCTCCTTTTCTCCTCTAGATTTCGTAGCCTCTTTCTTTGAGCTCCCTGAGCTCAACAACACCAACCTC CACCAGACCCTCTTAAATCTTTCTAAATCCTCCAATATAAAAGCCTTCATTATAGATTTCTTCTGCAGTGCTGCTTTTGAGTTTGTGTCCTCTAGACACA ACATCCCCATTTACTTTTTCTACACTACTTGTGCAAGTGGCCTCTCCATGTTTCTTCACCTCCCTATCCTTGATAAGATCATCACAAAGAGCTTGAAAGA CCTTGACATAATTATTGATTTACCTGGCATACCAAAAATTCCATCAAAAGAGTTGCCACCGGCTATTTCTGACCGGTCCCACAGAGTTTACCAATACCTC GTTGACACTGCCAAGCTGATGATCAAGTCTGCAGGACTCATAATAAATACATTTGAGTTACTTGAACGTAAGGCACTTCAGGCAATACAAGAAGGAAAGT GCGGCGCCCCAGATGAGCCAGTACCACCATTGTTTTGCGTTGGTCCACTTTTAACCACTAGCGAAAGCAAAAGCGAACACGAGTGTCTGACTTGGCTTGA CTCGCAACCAACCCGCAGTGTTTTATTTCTTTGTTTCGGCAGCATGGGAGTCTTTAATTCGCGTCAGTTAAGGGAAACGGCTATTGGGTTGGAGAAAAGT GGTGTTAGGTTCTTGTGGGTGGTGCGTCCTCCCCTGGCTGATAGCCAAACCCAAGCAGGCAGGTCAAGCACTCCAAATGAGCCATGTTTGGATTTACTTT TGCCGGAAGGGTTCTTGGAGAGAACCAAAGATCGGGGATTTCTAGTGAATTCATGGGCACCACAAGTTGAAATACTCAACCACGGCTCGGTTGGAGGGTT TGTGACTCATTGTGGATGGAATTCTGTACTTGAAGCCCTGTGTGCTGGGGTGCCAATGGTGGCTTGGCCTCTGTATGCAGAGCAAAGGATGAATAGGATT TTCTTGGTTGAGGAAATGAAGGTGGCTCTAGCATTTAGAGAAGCTGGGGACGATCACTTTGTGAACGCGGCCGAGCTGGAGGAGCGTGTGATTGAGCTGA TGAACTCGAAGAAAGGTGAAGCCGTTCGAGAAAGGGTTCTGAAACTTAGGGAGGATGCGGTGGTGGCAAAGAGTGACGGAGGATCTTCTTGCATAGCCAT GGCTAAGTTGGTGGATTGTTTTAAAAAAGGTTAA
AA sequence Show only first row Show all	>Potri.015G027700.1 pacid=42774928 polypeptide=Potri.015G027700.1.p locus=Potri.015G027700 ID=Potri.015G027700.1.v4.1 annot-version=v4.1 MEDTIVLYPSPGRGHLFSMVELGKQILEHHPSISITIIISAMPTESISIDDPYFSTLCNTNPSITLIHLPQVSLPPNTSFSPLDFVASFFELPELNNTNL HQTLLNLSKSSNIKAFIIDFFCSAAFEFVSSRHNIPIYFFYTTCASGLSMFLHLPILDKIITKSLKDLDIIIDLPGIPKIPSKELPPAISDRSHRVYQYL VDTAKLMIKSAGLIINTFELLERKALQAIQEGKCGAPDEPVPPLFCVGPLLTTSESKSEHECLTWLDSQPTRSVLFLCFGSMGVFNSRQLRETAIGLEKS GVRFLWVVRPPLADSQTQAGRSSTPNEPCLDLLLPEGFLERTKDRGFLVNSWAPQVEILNHGSVGGFVTHCGWNSVLEALCAGVPMVAWPLYAEQRMNRI FLVEEMKVALAFREAGDDHFVNAAELEERVIELMNSKKGEAVRERVLKLREDAVVAKSDGGSSCIAMAKLVDCFKKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.015G027700 [exp]	0	1
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Potri.010G067800 [exp]	3.00	0.8176
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Potri.007G003000 [exp]	3.60	0.8266
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.015G027800 [exp]	4.00	0.8169
					Potri.001G426980 [exp]	8.36	0.8176
AT2G23260		UGT84B1	UDP-glucosyl transferase 84B1 ...		Potri.009G095500 [exp]	9.48	0.7693	ZOG1.18
AT4G25330			unknown protein		Potri.002G216900 [exp]	11.18	0.8153
AT3G08640			Protein of unknown function (D...		Potri.006G111300 [exp]	12.24	0.7355
AT3G14280			unknown protein		Potri.001G163100 [exp]	13.41	0.7570
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Potri.012G140700 [exp]	14.49	0.7991
AT4G27740			Yippee family putative zinc-bi...		Potri.015G009100 [exp]	15.42	0.8124

Compare expression of checked genes

Potri.015G027700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.