Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13080 326 / 4e-106 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT3G26300 324 / 3e-105 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT1G13110 320 / 6e-104 CYP71B7 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) AT3G26280 315 / 1e-101 CYP71B4 "cytochrome P450, family 71, subfamily B, polypeptide 4", cytochrome P450, family 71, subfamily B, polypeptide 4 (.1) AT5G57260 314 / 2e-101 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT3G26270 313 / 7e-101 CYP71B25 "cytochrome P450, family 71, subfamily B, polypeptide 25", cytochrome P450, family 71, subfamily B, polypeptide 25 (.1) AT3G26330 311 / 2e-100 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26180 308 / 3e-99 CYP71B20 "cytochrome P450, family 71, subfamily B, polypeptide 20", cytochrome P450, family 71, subfamily B, polypeptide 20 (.1.2) AT4G31500 307 / 9e-99 SUR2, RNT1, RED1, ATR4, CYP83B1 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) AT3G26320 307 / 1e-98 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G130850 [exp] 516 / 3e-180 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 513 / 3e-179 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 490 / 3e-170 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 489 / 7e-170 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 487 / 7e-169 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 484 / 7e-168 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.008G223500 [exp] 444 / 8e-152 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 426 / 3e-145 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 416 / 3e-141 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009903 [exp] 450 / 3e-154 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10016601 [exp] 447 / 6e-153 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10019157 [exp] 422 / 4e-143 AT3G48300 358 / 1e-118 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1) Lus10029035 [exp] 414 / 7e-140 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10042815 [exp] 410 / 2e-138 AT1G13110 396 / 3e-133 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10017676 [exp] 409 / 2e-138 AT3G26300 367 / 3e-122 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10030708 [exp] 409 / 4e-138 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10040120 [exp] 403 / 1e-135 AT3G48280 377 / 5e-126 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10013194 [exp] 402 / 3e-135 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10033633 [exp] 401 / 4e-135 AT3G26330 362 / 4e-120 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.015G028000.1 pacid=42775198 polypeptide=Potri.015G028000.1.p locus=Potri.015G028000 ID=Potri.015G028000.1.v4.1 annot-version=v4.1 ATGGAGTGGCAACTCCCCTCCTTCAGTGCCCTTTCAACCTTCCTACTCTTCATGACCTTTCTTCTACTTAAAATTTTCAAGGAACCGAAAACAAATCACA ACTCAGGTAGAAATCCTCCTCCCGGACCAAAGGCATTGCGCATCATTGGAAACCTTCACCAGCTGGGGGGTGGACCTTCACTCCTTATTCGCCTCAGAGA GTTGGCCGAGAGGTATGGACCGATCATGCTGCTCCAGGTTGGTGAAGTGCCCACCATTATTATATCATCACCAGAATTAGCACAAGAAGTGATGAAAACC CATGAGAGCTGTTTTGATGAAAGGCCTCCTTTCTTTGCTGGAAATGTCTACTTTTACGGCAATCGAGACCTTATATTTGCACCATACGGAGATTATTGGA AACAGCTGCGAAAAATTGTCACGATGGAGGTTCTTAGTCCTATACGTGTGCGTACTTTCAGAGCAACAAGGGAAGAAGAGGTAGCGAGTCTTATAAGAAC CATTTCTTCCCAGCAAGGATCGGCCATTAACCTCAGTCAGATATTGTTTTCTTTCACATATAGCATAATTTCAAGGATAAGCGTTGGAAGGAATAGCAAA AACCAAAAAGAATTCGCAACCATCGTCAAAGATTTCTCAACAATTTCCAAAGAATTGTCCCTAGCAGCAGGAGGTGCCAATGTGGTTGATCTGTACCCAT CCCAAAAGCTCCTTCACATGTTTAGTTGGAGGAAGTTTAGGCTCGGGAGGGAGCATAAAAAAGCAAATAAAATTCTTGAAAGGCTGATAAAGGAGCGCAA AGCCAGCAAGAGAGACAAAGAGATTGCTGAAAATGAAGTGGAGGATCTTCTTGATGTTCTCTTAAATCTCCAACTCACTGTAGGCTTGGACTCCCCCTTA ACTGATGAATGCGTCAAAGCACTCCTCCTGGATATGTTCGCTGGTGGAGGTGATACAACGTTAACAGTTCTAGAATGGGCAATGTCAGAACTCATGAAAA ATCCAAGAGTCAGGGAAAAAGCACAAAAAGAAGTGAGAGCACTTTTCAATGATGTCGGGTACATTGATGAATCAAACGTTCATGAATTACAGTTCTTGAA CTTAACGCTCAAGGAAACTCTAAGATTACACCCACCCTTGTGCGTATATCCAAGAGAATGTAAGGTGAACTGCAAGGTTGCTGGATATGACTTAGAAGCT AAAACTAGAGTTCTCATCAATGCCTGGATGATAGGGAGGGATCCCAAGTACTGGACTGAACCTGAGAAATTCTACCCAGAGAGATTCTTAGATTGTTCAA CTGATTACAAAGGTGCTAATTTCGAGTTTCTCCCATTTGGTTCTGGAAAAAGGATTTGCCCAGGAATGGCGTTTGGTATTGCTACTGTCGAGTTGCCGCT AGCAAGATTGTTATTACATTTTGACTGGAAAATTCCTAATGGAATCAAGCCTGAAGATTTTGACATGAGCGAGATTGTTAGTGCGTCAGTCACAAGAAAA AACGATATTGTCTTAATTCCAGTTACATGCTATGATCCTCCCGTCAAGGGTTAA
AA sequence Show only first row Show all	>Potri.015G028000.1 pacid=42775198 polypeptide=Potri.015G028000.1.p locus=Potri.015G028000 ID=Potri.015G028000.1.v4.1 annot-version=v4.1 MEWQLPSFSALSTFLLFMTFLLLKIFKEPKTNHNSGRNPPPGPKALRIIGNLHQLGGGPSLLIRLRELAERYGPIMLLQVGEVPTIIISSPELAQEVMKT HESCFDERPPFFAGNVYFYGNRDLIFAPYGDYWKQLRKIVTMEVLSPIRVRTFRATREEEVASLIRTISSQQGSAINLSQILFSFTYSIISRISVGRNSK NQKEFATIVKDFSTISKELSLAAGGANVVDLYPSQKLLHMFSWRKFRLGREHKKANKILERLIKERKASKRDKEIAENEVEDLLDVLLNLQLTVGLDSPL TDECVKALLLDMFAGGGDTTLTVLEWAMSELMKNPRVREKAQKEVRALFNDVGYIDESNVHELQFLNLTLKETLRLHPPLCVYPRECKVNCKVAGYDLEA KTRVLINAWMIGRDPKYWTEPEKFYPERFLDCSTDYKGANFEFLPFGSGKRICPGMAFGIATVELPLARLLLHFDWKIPNGIKPEDFDMSEIVSASVTRK NDIVLIPVTCYDPPVKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13080		CYP71B2	"cytochrome P450, family 71, s...		Potri.015G028000 [exp]	0	1
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.002G026500 [exp]	2.00	0.9584
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Potri.001G101500 [exp]	2.23	0.9158
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.002G025800 [exp]	2.82	0.9498	CYP83F2
AT4G25410	bHLH	bHLH126	basic helix-loop-helix (bHLH) ...		Potri.012G132100 [exp]	3.00	0.9430
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.002G026300 [exp]	4.00	0.9315
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.002G025500 [exp]	5.29	0.9136
AT3G60390	HD	HAT3	homeobox-leucine zipper protei...		Potri.002G136400 [exp]	6.00	0.9138	Pt-ATHB.8
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Potri.004G150400 [exp]	7.34	0.9111	Pt-CLB6.1
AT5G52600	MYB	AtMYB82	myb domain protein 82 (.1)		Potri.018G127700 [exp]	7.41	0.9083
					Potri.003G026650 [exp]	7.68	0.8506

Compare expression of checked genes

Potri.015G028000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.