Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19180 858 / 0 ATCDP1, ARC6H, PARC6 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) AT5G42480 87 / 2e-17 ARC6 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G035900 [exp] 1288 / 0 AT3G19180 843 / 0.0 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) Potri.012G036100 [exp] 346 / 1e-113 AT3G19180 297 / 4e-96 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) Potri.005G235000 [exp] 91 / 2e-18 AT5G42480 884 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026359 [exp] 873 / 0 AT3G19180 752 / 0.0 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) Lus10042298 [exp] 550 / 0 AT3G19180 635 / 0.0 A. THALIANA CHLOROPLAST DIVISION SITE POSITIONING 1, paralog of ARC6 (.1.2) Lus10033922 [exp] 95 / 1e-19 AT5G42480 827 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1) Lus10024309 [exp] 82 / 1e-15 AT5G42480 814 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13355 [poplar] [flax] DUF4101 Protein of unknown function (DUF4101)
Representative CDS sequence Show only first row Show all	>Potri.015G028101.2 pacid=42776621 polypeptide=Potri.015G028101.2.p locus=Potri.015G028101 ID=Potri.015G028101.2.v4.1 annot-version=v4.1 ATGGCAGTGTCGAATTTGAATCTGACGCCGACCATTCTTTCATCTTCTTCGTGTCGTTGCTGTTATTGTCATTTTAACCAGAAAAGTGATTGCTCTCTTC TTTGTTTAGGTTTTGTTAGAAAAACAATTTCTGTTTCTAGGGTTTTGAGGAAGCCTGATTTTGAATCTAGCAACAAGTTGATTTTCAATGCCACTACTGA TACTCGCATCGTTCACAATGTCGCCGCTACGACGAAGGCCACATCCACCGCCACTGTTGAAATCCCCGTCACTTGTTATCAGCTTGTTGGTGTTCCTGAT AAAGCAGAGAAAGATGAGATTGTTAGGTCAGTGATGCAATTGAAAAATGCTGAAGTAGAAGAGGGTTATACCATGGATGCTGTTATGTCTCGGCAGGATC TTCTAATGGATGTAAGGGATAAGCTTCTTTTTGAACCAGAATATGCTGGGAATGTGAGGGACAAGATCCCTCCTAAATCCTCTCTACGTATTCCATTGGC TTGGTTGCCTGGTGCTCTTTGCTTACTTCAAGAGGTTGGAGAAGAGAAGTTGGTGCTGGATATTGGCCAAGCAGCGCTCCAGCATCCAGATGCCAAGCCA TATGTTCACGATGTGCTTCTATCCATGGCATTGGCCGAGTGTGCAATTGCAAAGATTGGTTTTGAGAGGAACAAAGTGTCATTTGGATTTGAAGCTCTTG CTCGTGCTCAGTGTCTTCTGAGGAGTAAAATCTCACTTGGCAAGATGGCATTACTATCTCAGATAGAAGAATCCCTGGAGGAGCTTGCACCTGCTTGCAC ATTGGAATTATTAGGCACGCCTCACTCTCCTGAAAATGCAGAACGGAGACGAGGAGCAATTGCAGCCTTGCGTGAATTGCTCAGGCAGGGCCTTGATTTG GAAACATCATGCAGAGTCCAAGACTGGCCATGTTTTCTGAGCCAAGCACTTAACAGACTCATGGCTACAGAAATAGTTGATCTTCTTCCTTGGGATGATT TAGTCCTCATTCGCAAGAATAAGAAATCACTTGAGTCACAGAATCAAAGGGTTGTGATCGATTTCAATTGTTTTTACGTGGTGCTTTTAGCTCATATTGC TCTTGGTTTTTCTAGCAAGCAAACAGAATTGATCAACAAAGCAAAAACTATATGTGAGTGTTTGATAGCATCGGAGAGTATTGATCTAAAATTTGAAGAA GCTTTCTGCTTGTTTCTGCTTGGACAGGGCAATCAAGACCAGGCAGTTGAAAAGCTTCAGCAGCTACAATCAATTTCAAATCCTGCTGCACAGAATTTAG TCCCAGGAAAGGAGATAAAAGATGTCTCTGGTGTAAAACCATCATTGGAAACATGGCTGAAGGATTCTGTGCTTCTTGTCTTTTCGGATACTAGAGACTG CTCTCCTTCTTTGGTGAATTTTTTTGGTGGTGAAAAGAGAGTTATTGGAAGCAAGAAAAGTAGAGTACCTGCACAAGCCACTCCTACTATGTCCCATCGA CCACTGTCTGATATTGCTATGAAACGAATGGATTCTGGGGAATCACGTCGATATATGAACTCTTCCCAACATTTCAGGTCTGCTGTAAAGCAGTTGTCTC CAACTGATTTGCAAAGCTCATTGATCTTGACCGAGAATGGCAGTGGAAGCAACAGTAATGAGCCATCAGTTCAATTGAAGAGAGAGATTGGTGCTCACAA TAGAAGAACTTGGGAAAGTTGGTTACAACATGCAGATGTAGTTAGAAAGATAAGTTTTGTTGCGGTATTGGGGTGCATTGTGTTTATTACTTTTAAAATG TCAGGCATGGGTTTAAGAAGGATAAGAGTTGCATCTAATCTGATGTCTGATAGAACTAGTATTGGCACAAGTTCCCTTGCCTGGAAAACAGATTCTTTTC TTGATCGCAATGTTCACCCTGTTTATATTAGAGGAAGCGGTATTACTGGAAGAATGAGAAAGCTGTTGTCCATGCTTAAAATGCAGTATGGAAACCAGCT CGATACTAAAAAATTGCAAAGTTCAAGGCTTGCTGCTAGTATATCACCTTCTATGGAAACTGTATCTAGGAAGCAAATGCCTGTGGAAGAAGCTGAAGCT CTTGTTAATCATTGGCAGGCAATTAAAGCTGAAGCTCTGGGTCCTTGGTACCAAGTTCACAGCCTCTCTGAAGTCCTTGACGAGTCCATGCTTGCCCAGT GGCAAGATTTAGCTGAAGCAGCGAAAGCACAGTCTTGTTATTGGAGATTTGTTTTGCTGCAACTGTCCATTCTGCGAGCTGACATTTTCTCAGATGGATA TGGCTTGGAGATTGCTGAAATTGAAGTTCTCCTTGAGGAAGCAGCAGAGCTTGTTGATGAATCTCAGCAGAAAAACCCAAACTATTACAGCACCTATAAA ACCCTTTATGTTCTAAAAAGGCAAGATGATGGTTCATGGAGGTTCTGCGAAAGTGATATTCAAACATCATCTTGA
AA sequence Show only first row Show all	>Potri.015G028101.2 pacid=42776621 polypeptide=Potri.015G028101.2.p locus=Potri.015G028101 ID=Potri.015G028101.2.v4.1 annot-version=v4.1 MAVSNLNLTPTILSSSSCRCCYCHFNQKSDCSLLCLGFVRKTISVSRVLRKPDFESSNKLIFNATTDTRIVHNVAATTKATSTATVEIPVTCYQLVGVPD KAEKDEIVRSVMQLKNAEVEEGYTMDAVMSRQDLLMDVRDKLLFEPEYAGNVRDKIPPKSSLRIPLAWLPGALCLLQEVGEEKLVLDIGQAALQHPDAKP YVHDVLLSMALAECAIAKIGFERNKVSFGFEALARAQCLLRSKISLGKMALLSQIEESLEELAPACTLELLGTPHSPENAERRRGAIAALRELLRQGLDL ETSCRVQDWPCFLSQALNRLMATEIVDLLPWDDLVLIRKNKKSLESQNQRVVIDFNCFYVVLLAHIALGFSSKQTELINKAKTICECLIASESIDLKFEE AFCLFLLGQGNQDQAVEKLQQLQSISNPAAQNLVPGKEIKDVSGVKPSLETWLKDSVLLVFSDTRDCSPSLVNFFGGEKRVIGSKKSRVPAQATPTMSHR PLSDIAMKRMDSGESRRYMNSSQHFRSAVKQLSPTDLQSSLILTENGSGSNSNEPSVQLKREIGAHNRRTWESWLQHADVVRKISFVAVLGCIVFITFKM SGMGLRRIRVASNLMSDRTSIGTSSLAWKTDSFLDRNVHPVYIRGSGITGRMRKLLSMLKMQYGNQLDTKKLQSSRLAASISPSMETVSRKQMPVEEAEA LVNHWQAIKAEALGPWYQVHSLSEVLDESMLAQWQDLAEAAKAQSCYWRFVLLQLSILRADIFSDGYGLEIAEIEVLLEEAAELVDESQQKNPNYYSTYK TLYVLKRQDDGSWRFCESDIQTSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Potri.015G028101 [exp]	0	1
AT5G20930		TSL	TOUSLED, Protein kinase superf...		Potri.004G193300 [exp]	4.47	0.9094
AT5G40270			HD domain-containing metal-dep...		Potri.009G147800 [exp]	4.58	0.9243
					Potri.007G010000 [exp]	5.47	0.9171
AT5G51290			Diacylglycerol kinase family p...		Potri.004G233300 [exp]	5.47	0.8976
AT1G26170			ARM repeat superfamily protein...		Potri.008G109300 [exp]	7.54	0.8918
AT5G09790		PDE336, SDG15, ...	SETDOMAIN GROUP 15, PIGMENT DE...		Potri.005G058000 [exp]	9.79	0.8885
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Potri.010G122932 [exp]	10.19	0.8996
AT5G01270		CPL2, ATCPL2	carboxyl-terminal domain (ctd)...		Potri.006G099402 [exp]	11.66	0.8952
AT5G51230	C2H2ZnF	AtEMF2, CYR1, V...	CYTOKININ RESISTANT 1, EMBRYON...		Potri.001G080200 [exp]	12.08	0.8538	VEF901,Pt-VRN2.5
AT3G14470			NB-ARC domain-containing disea...		Potri.003G200080 [exp]	14.69	0.9058

Compare expression of checked genes

Potri.015G028101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.