Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23250 507 / 0 Succinyl-CoA ligase, alpha subunit (.1.2) AT5G08300 499 / 8e-179 Succinyl-CoA ligase, alpha subunit (.1) AT3G06650 80 / 2e-16 ACLB-1 ATP-citrate lyase B-1 (.1) AT5G49460 77 / 2e-15 ACLB-2 ATP citrate lyase subunit B 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G036200 [exp] 551 / 0 AT5G23250 496 / 6e-178 Succinyl-CoA ligase, alpha subunit (.1.2) Potri.005G091400 [exp] 511 / 0 AT5G23250 515 / 0.0 Succinyl-CoA ligase, alpha subunit (.1.2) Potri.008G105300 [exp] 77 / 2e-15 AT5G49460 1131 / 0.0 ATP citrate lyase subunit B 2 (.1) Potri.010G145766 [exp] 73 / 3e-14 AT5G49460 612 / 0.0 ATP citrate lyase subunit B 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017389 [exp] 518 / 0 AT5G08300 588 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10010187 [exp] 509 / 0 AT5G08300 588 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10040992 [exp] 501 / 9e-180 AT5G08300 591 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10010185 [exp] 332 / 1e-114 AT5G08300 377 / 1e-132 Succinyl-CoA ligase, alpha subunit (.1) Lus10013440 [exp] 306 / 9e-103 AT5G08300 422 / 3e-148 Succinyl-CoA ligase, alpha subunit (.1) Lus10003877 [exp] 188 / 3e-58 AT5G23250 198 / 6e-63 Succinyl-CoA ligase, alpha subunit (.1.2) Lus10017331 [exp] 142 / 2e-40 AT5G08300 171 / 5e-52 Succinyl-CoA ligase, alpha subunit (.1) Lus10017337 [exp] 116 / 3e-31 AT5G08300 132 / 8e-38 Succinyl-CoA ligase, alpha subunit (.1) Lus10028767 [exp] 112 / 5e-31 AT5G23250 113 / 2e-32 Succinyl-CoA ligase, alpha subunit (.1.2) Lus10010186 [exp] 112 / 1e-30 AT5G08300 116 / 6e-33 Succinyl-CoA ligase, alpha subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0506 [poplar] [flax] Succ_CoA_synth PF00549 [poplar] [flax] Ligase_CoA CoA-ligase CL0063 [poplar] [flax] NADP_Rossmann PF02629 [poplar] [flax] CoA_binding CoA binding domain
Representative CDS sequence Show only first row Show all	>Potri.015G028200.1 pacid=42775255 polypeptide=Potri.015G028200.1.p locus=Potri.015G028200 ID=Potri.015G028200.1.v4.1 annot-version=v4.1 ATGGCTCGTCAAGCCGTCGCAAAACTACTCGGCTCGATCGCATCACGCAAGCCTTCCTCCATCAATTCTCTCCTCAACCTCTCGCCGACCTCGGCGGCTC AGACTCGCCATTATGCAGCGGCTCCACCACCACCTCCGGCGGTTTTCGTCGACAAAAACACTCGAGTGATTTGCCAAGGCATCACTGGCAAAAACGGCAC TTTCCACACCGAACAAGCTATCGAATACGGCACTAAAATGGTAGGAGGTGTGACGCCGAAGAAGGGAGGGACGGAGCACTTAGGGCTTCCAGTTTTCAAC ACAGTGGCGGAAGCAAAGGCTGAAACGAAGGCTAATGCTTCGGTTATCTATGTTCCCCCGCCATTTGCTGCCGCAGCGATTATGGAGGCAATGGAAGCTG AGTTGAATCTTGTTGTGTGCATTACTGAAGGAATCCCTCAACATGATATGGTACGTGTGAAGGCTGCTCTGAACAGGCAAACTAAAACTCGGTTGATTGG GCCAAACTGTCCTGGAATTATTAAACCGGGAGAATGTAAAATAGGTATAATGCCTGCCTACATCCATAAACCTGGTCGTATTGGAATAGTTTCTCGATCC GGAACTTTGACCTATGAAGCGGTTTTCCAAACAACTGCTGTTGGCCTTGGACAATCCACTTGTGTTGGTATAGGAGGAGATCCATTCAATGGAACAAACT TTGTTGATTGCATAGAGAAGTTTCTTGTTGATCCTCAAACAGAAGGTATCATTCTTATAGGGGAGATAGGTGGAACTGCAGAAGAGGATGCTGCTGCATT AATAAAGGAAAGTGGAACTGAGAAGCCTGTTGTGGCCTTCATTGCTGGACTTACTGCACCACCAGGCCGTCGTATGGGACATGCTGGAGCTATTGTCTCA GGTGGAAAAGGGACTGCCCAAGACAAAATCAAGACCCTAAGGGAAGCTGGAGTTACTGTTGTAGAGTCCCCTGCAAAAATTGGTGTTGCAATGCTTGATG TTTTTAAGCAGAGGGGTCTCGCAAATTAA
AA sequence Show only first row Show all	>Potri.015G028200.1 pacid=42775255 polypeptide=Potri.015G028200.1.p locus=Potri.015G028200 ID=Potri.015G028200.1.v4.1 annot-version=v4.1 MARQAVAKLLGSIASRKPSSINSLLNLSPTSAAQTRHYAAAPPPPPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFN TVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELNLVVCITEGIPQHDMVRVKAALNRQTKTRLIGPNCPGIIKPGECKIGIMPAYIHKPGRIGIVSRS GTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCIEKFLVDPQTEGIILIGEIGGTAEEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVS GGKGTAQDKIKTLREAGVTVVESPAKIGVAMLDVFKQRGLAN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23250			Succinyl-CoA ligase, alpha sub...		Potri.015G028200 [exp]	0	1
AT5G36290			Uncharacterized protein family...		Potri.013G086700 [exp]	7.54	0.9346
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Potri.002G222400 [exp]	13.19	0.9245
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Potri.009G142800 [exp]	13.30	0.8655
AT5G37310			Endomembrane protein 70 protei...		Potri.004G075450 [exp]	13.92	0.9247
AT5G64970			Mitochondrial substrate carrie...		Potri.007G093300 [exp]	17.32	0.9018
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Potri.001G190400 [exp]	18.02	0.9201
AT4G23690			Disease resistance-responsive ...		Potri.013G142702 [exp]	19.20	0.9145
AT1G12000			Phosphofructokinase family pro...		Potri.011G015600 [exp]	22.18	0.9204
AT5G63400		ADK1	adenylate kinase 1 (.1.2)		Potri.012G095300 [exp]	23.36	0.9087
AT1G68680			unknown protein		Potri.011G024500 [exp]	27.38	0.9083

Compare expression of checked genes

Potri.015G028200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.