Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49610 78 / 7e-16 F-box family protein (.1) AT1G20795 51 / 7e-07 F-box family protein (.1) AT5G03970 49 / 5e-06 F-box associated ubiquitination effector family protein (.1.2) AT5G18160 48 / 7e-06 F-box and associated interaction domains-containing protein (.1) AT3G16210 48 / 8e-06 F-box family protein (.1) AT3G23950 47 / 2e-05 F-box family protein (.1) AT3G20620 46 / 2e-05 F-box family protein-related (.1) AT3G22350 44 / 6e-05 F-box and associated interaction domains-containing protein (.1.2) AT1G11620 42 / 0.0004 F-box and associated interaction domains-containing protein (.1) AT3G52320 42 / 0.0005 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G027200 [exp] 111 / 4e-27 AT5G07610 84 / 1e-17 F-box family protein (.1) Potri.005G124500 [exp] 99 / 9e-23 AT5G03970 77 / 3e-15 F-box associated ubiquitination effector family protein (.1.2) Potri.008G038000 [exp] 93 / 6e-21 AT1G64290 175 / 3e-51 F-box protein-related (.1) Potri.006G167500 [exp] 89 / 1e-19 AT1G64290 118 / 2e-30 F-box protein-related (.1) Potri.014G187100 [exp] 88 / 3e-19 AT1G64295 132 / 2e-35 F-box associated ubiquitination effector family protein (.1) Potri.010G149000 [exp] 88 / 3e-19 AT5G49610 528 / 0.0 F-box family protein (.1) Potri.005G254500 [exp] 87 / 9e-19 AT4G09190 78 / 1e-15 F-box and associated interaction domains-containing protein (.1) Potri.001G462650 [exp] 85 / 4e-18 AT1G64295 121 / 3e-31 F-box associated ubiquitination effector family protein (.1) Potri.010G224400 [exp] 85 / 8e-18 AT1G64295 161 / 1e-45 F-box associated ubiquitination effector family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015048 [exp] 284 / 4e-93 AT5G07610 74 / 3e-14 F-box family protein (.1) Lus10014320 [exp] 101 / 1e-23 AT5G07610 74 / 2e-14 F-box family protein (.1) Lus10024021 [exp] 85 / 8e-18 AT5G07610 79 / 9e-16 F-box family protein (.1) Lus10041733 [exp] 84 / 2e-17 AT5G07610 79 / 1e-15 F-box family protein (.1) Lus10017086 [exp] 75 / 1e-14 AT5G49610 500 / 7e-179 F-box family protein (.1) Lus10037802 [exp] 75 / 1e-14 AT5G49610 497 / 1e-177 F-box family protein (.1) Lus10026028 [exp] 56 / 1e-09 ND 37 / 6e-04 Lus10022006 [exp] 50 / 2e-06 AT5G03970 400 / 2e-138 F-box associated ubiquitination effector family protein (.1.2) Lus10042547 [exp] 49 / 3e-06 AT5G03970 405 / 3e-140 F-box associated ubiquitination effector family protein (.1.2) Lus10031512 [exp] 47 / 2e-05 AT3G16210 100 / 8e-23 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.015G028500.2 pacid=42776517 polypeptide=Potri.015G028500.2.p locus=Potri.015G028500 ID=Potri.015G028500.2.v4.1 annot-version=v4.1 ATGTCAGATTTTGGGTGCTTGGACACAGACATTCCCTTTGATGTGCTCTCCCGCTTGCAAACGAAAGATTTGCTGGGATTGAAGTGTGTCTCTAAAGGAT GGAAGGACCTTATATCTGATCGCTCTTTCATCCAGGCTCAGTCACAAAAGAAAGAGCCACTGTCAGGATTCTTCTTCCAGCAGAGGCATCGGTACTGTCC TGATGACATAAAAACTATTACCTATTTTCCTGTTGAAAGGAATAGATTGCAGCAGGATGTCTTCGCTTTCCTCCCTCAGGATGTTGTGGTGTTGGCATTG TGCAATGGGCTTGTTTGTTGTCGAAGTTGCTACCCTTTTGAAGATCCAGCTATCTATGTCTGCAACCCCTTGAACAGTGAATGGTGGAAACTGGATTGGA AGGAACCTGGCAAAGAAAGCTTCATTGCTCTGGCGTTCAATCCCTTCCAGGATATCTCTGTCAATTTGACAAATTTCAAGGTTGTTAGACCGAGGCAATT TGAGACTGAGCAGGAGGAAGCATACTTCTCATTTGAAATATATGCCTCAAGGACAAGGAATTGGAAGCTATCAAAAGAGGTTTGCTGGTGTGACAACAGT TTATCCAAGAATGAAGGCATTTTTAGTGGAGGGATCTTACACTGGCTCACTGATGGTGACCAAATCCTGACTTTTAATGTAGAGAATGAACTAGCTTTGC TGATTTCAACGCCACTCCCAGCTGGAGAGTTTAACACCAGGCCTCACGCTTGCATTGGAGAATCTGAAGGTCAACTGTATTATGTACTGATCTCTGAAGA AGGACTTCATGTATGGGTTCTTGAGGACTACTTTGATTCTACTTGGTCTCTCAAGTACTCGAAAACTCTTGCGCAGATAGAAAAGGAACACTCGGACATC ATGATCAATTTATACAACAGAGTGATGCTCTGGCAGAGAATTGATGATCGCCCATGGATGGATCCCTTGGCCTTCAAAGATGGGGTCTTGGTAGTAAGGA TATCTAATACCATCTACTTATATCATGTTGACACCAGCAAGATGGAGGAAGTTGGCGAGACTTCAAAGTTTGGTGCAATGTCCTGGGTTTCCCCCATAGT GCTTCCCTATACCATGAGCCTGGTTCCTTTAGGTCGTCAATTGGGGTCACCTTAA
AA sequence Show only first row Show all	>Potri.015G028500.2 pacid=42776517 polypeptide=Potri.015G028500.2.p locus=Potri.015G028500 ID=Potri.015G028500.2.v4.1 annot-version=v4.1 MSDFGCLDTDIPFDVLSRLQTKDLLGLKCVSKGWKDLISDRSFIQAQSQKKEPLSGFFFQQRHRYCPDDIKTITYFPVERNRLQQDVFAFLPQDVVVLAL CNGLVCCRSCYPFEDPAIYVCNPLNSEWWKLDWKEPGKESFIALAFNPFQDISVNLTNFKVVRPRQFETEQEEAYFSFEIYASRTRNWKLSKEVCWCDNS LSKNEGIFSGGILHWLTDGDQILTFNVENELALLISTPLPAGEFNTRPHACIGESEGQLYYVLISEEGLHVWVLEDYFDSTWSLKYSKTLAQIEKEHSDI MINLYNRVMLWQRIDDRPWMDPLAFKDGVLVVRISNTIYLYHVDTSKMEEVGETSKFGAMSWVSPIVLPYTMSLVPLGRQLGSP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49610			F-box family protein (.1)		Potri.015G028500 [exp]	0	1
AT3G55570			unknown protein		Potri.001G313700 [exp]	3.87	0.8036
					Potri.019G005913 [exp]	6.48	0.8081
					Potri.006G016250 [exp]	9.16	0.7155
AT5G41460			Protein of unknown function (D...		Potri.015G106101 [exp]	13.56	0.7774
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Potri.004G019800 [exp]	21.97	0.7337
AT3G48660			Protein of unknown function (D...		Potri.015G098300 [exp]	23.08	0.7565
AT3G14000		ATBRXL2, BRX-LI...	DZC (Disease resistance/zinc f...		Potri.001G170800 [exp]	23.74	0.7569
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Potri.010G023600 [exp]	24.08	0.7354
AT5G63390			O-fucosyltransferase family pr...		Potri.012G095166 [exp]	24.24	0.6768
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Potri.001G082400 [exp]	25.78	0.7386

Compare expression of checked genes

Potri.015G028500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.