Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 387 / 2e-119 disease resistance family protein / LRR family protein (.1) AT4G13920 292 / 1e-84 AtRLP50 receptor like protein 50 (.1) AT2G15080 291 / 1e-83 AtRLP19 receptor like protein 19 (.1.2) AT3G11010 263 / 3e-74 AtRLP34 receptor like protein 34 (.1) AT3G05660 260 / 2e-73 AtRLP33 receptor like protein 33 (.1) AT5G27060 256 / 9e-72 AtRLP53 receptor like protein 53 (.1) AT3G11080 251 / 4e-70 AtRLP35 receptor like protein 35 (.1) AT1G45616 250 / 3e-69 AtRLP6 receptor like protein 6 (.1) AT4G20140 248 / 7e-68 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT2G32680 243 / 2e-67 AtRLP23 receptor like protein 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G025100 [exp] 957 / 0 AT2G34930 361 / 3e-109 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 918 / 0 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1) Potri.015G024800 [exp] 878 / 0 AT2G34930 299 / 3e-86 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 863 / 0 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 844 / 0 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 835 / 0 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 835 / 0 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 790 / 0 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 534 / 2e-174 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016340 [exp] 449 / 1e-141 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 443 / 2e-139 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016384 [exp] 441 / 3e-138 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1) Lus10002743 [exp] 436 / 5e-137 AT2G34930 476 / 6e-153 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 437 / 8e-137 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 436 / 9e-137 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10039531 [exp] 434 / 5e-136 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1) Lus10002742 [exp] 433 / 6e-136 AT1G58190 399 / 6e-124 receptor like protein 9 (.1.2) Lus10016342 [exp] 430 / 6e-135 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 428 / 1e-133 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.015G028600.2 pacid=42775176 polypeptide=Potri.015G028600.2.p locus=Potri.015G028600 ID=Potri.015G028600.2.v4.1 annot-version=v4.1 ATGGCATTTTTTATTGTCCAGTGTTCAGCTTCTTTATATCCTAATATTGTGCTACTCTTGTACGTGAAACCAGGTCCTAGATTCATTTCAGCAGCGGAAA GGGCAGAATTCAGGTGCATAGAAAGGGAAAGACAAGCACTCCTCAGTTTTAAACAAGAACTTGAGTATCCCTCTGGTCTTCTTTCTTCTTGGGGAAGTGA AGAAGGACAGAAGAGTGATTGCTGTAAATGGGTAGGAGTTGGTTGCAACAACAGAACTGATCGCATCACCATGCTTGATCTTCATGGTTTGGCTGTGGGA GGTAACATTACCGATTCATTACTTGAGTTGCAGCATTTGAATTATTTAGACCTTAGTGATAATAGTTTCTATGGGAATCCTTTCCCAAGTTTCGTTGGCT CCCTCAGGAAATTAAGATACCTGAGTCTCTCCAACAATGGTTTAATCGGAAGGCTGTCATATCAGCTTGGGAACCTCTCTAGCCTGCAATCTCTTGATCT CAGCTATAATTTTGATGTTAGTTTTGAAAGCCTTGATTGGCTTTCTCGTCTTTCTTTTTTGGAGCATCTTCACCTGACTGGAAATCACCTTACCCAAGCC AGTGATTGGATTCAAGTCGTTAACAAGCTCCCTCGCCTAAAAGACTTGCAGTTAAGTGATTGTAGCCTTTTAAGCATCGTTCCTCCAGCTCTTTCTTTCG TCAATTCTTCAAGATCTCTTGCTATCCTTGATCTTTCATTCAACCATCTTGCTTCATCAATAGTCCCCTGGTTGTCCAACTCCAGTGATAGCCTTGTTGA TCTTGACCTATCTGCCAACCAGTTACAAGGTTCTATTCCAGATGCTTTCGGGAAAATGACTTCTCTCACGAATCTTCATCTTGCCGATAATCAACTTGAA GGAGGAATTCCAAGATCCTTTGGAGGAATGTGCAGCTTACGTGAGCTAGATTTGTCCTCCAACAACCTCAGTGGACCCCTTCCCAGGTCTATTCGAAATA TGCATGGATGCGTAGAGAACTCGCTGAAGAGTTTGCAATTACGTGATAACCAACTTCATGGTTCTTTGCCTGATTTTACAAGATTCTCTTCCGTTACTGA ATTGGACCTCTCTCATAACAAATTGAATGGATCTTTACCAAAAAGATTTAGACAACGTTCTGAACTTGTTTCCTTGAACTTGAGTGACAACCAACTCACT GGATCACTGCCAGATGTTACGATGCTTTCATCATTGAGAGAGTTCCTTATATATAACAATCGATTAGATGGGAATGCTTCTGAAAGTATTGGAAGCTTAT CTCAGCTCGAGAAATTGAATGTTGGGAGGAATTCTCTGCAAGGTGTGATGTCTGAAGCTCATTTCTCAAATCTATCCAAATTACAGGAATTGGATTTATC TCATAACTCTCTGGTTTTGAAATTTACGTACGACTGGGCTCCCCCTTTTCTATTGAATTACCTTTATCTTTCATCTTGCAATTTGGGCCCTCATTTCCCA CAATGGCTGCGAAATCAAAATAATTTATGGGTGCTAGATATCTCTGGTACTGGAATTTCTGATACAATCCCCAATTGGTTTTGGGATCTGTCTAATTCCA GCTTGACCCTCTTAAACTTTTCCCACAACAACATGCGAGGTATGTTGCCTGATTTGTCATCAAAATATGCTGAAATTGTTGGGGTAGATTTGAGTTCCAA CCAGTTTGAGGGCCCGTTACCAACTTTTCCTTTACAAACAATTGCCTTAGATCTCTCTAACAATATGTTTTCAGGGCCAAATTCTGCTATATGTAAGATT GCAGGTCCGCAATTGATCTCTCTTGACCTCTCGAAGAATCTATTGTCAGGAAATCTTCCTAATTCCTTAATCCCTTTCGATGGATTAGCATTTCTGGACT TGGCCCACAACAATTGTTCTGGTAGAATTCCTAGGTCCTTGGGATCACTATTGATGCTTCGAACATTGAATTTACACCTAAGTATAAATAAATTGCGTAG CAAAATACCAGCTTGGATGGGAGAAAGCCTTTTGTCTCTGAAATTCCTCTTCCTACAATCTAATGAGTTTTATGGAAGCATACCATCTCATTTTTGTCGG CAAAGACATATTAAGATATTGAACCTCTCTCTGAACAACATCTCTGGAATCATTCCAAGATGCCTCGACAATTATACTGCTATGATTCAGAAAGGGGAAT TAACTGATATTAATTCTGGTGAACTTGGTTTGGGACAACCAGGCCAACATGTTAACAAAGCAGTGGTTGATTGGAAAGGAAGACAGTATGAATACGTACG GAGTCTGGGACTTTTCAGGATTATTGATTTTGCAGGAAACAAACTAACCGGAGAAATTCCAGAAGAGATAACAAGTCTCTTACAATTGGTTGCACTGAAC TTGTCAGGAAACAATTTGACCGGAGGTATCCCTCTCAAGATTGGGCAGCTGAAACAGTTAGAATCTCTTGATTTGTCAGGAAATCAGTTGTCAGGAGTGA TTCCATCCAGCACAGCTTCTCTAAGTTTTTTGAGTTACTTGAATCTCTCCTACAATAACCTGTCCGGGAAAATTCCATCAGGCACCCAGCTGCAAAGCTT TAATGCTTCAGCATTTGCCGGTAATCTTGCCTTGTGCGGGCTGCCGGTCACACATAAATGTCCTGGAGATGAGGCGACTCCAAGACCACTGGCTAATGAT GACAACCAAGGCAATGAAACAGTTGTTGATGAATTCAGGAGATGGTTTTATACTGCTTTGGGAATCGGTTTCGGTGTGTTCTTTTGGGGAGTTTCAGGTG CTTTACTGCTAAAGCGTTCTTGGAGACATGCCTATTTCCGGTTCTTGGACGAAGCATGGGACTGGATCTACGTGAAAATAGCTGTGCAGAAGGCAAGACT GCAGCAGATATATCTGAGGCTCCTGTCTTAG
AA sequence Show only first row Show all	>Potri.015G028600.2 pacid=42775176 polypeptide=Potri.015G028600.2.p locus=Potri.015G028600 ID=Potri.015G028600.2.v4.1 annot-version=v4.1 MAFFIVQCSASLYPNIVLLLYVKPGPRFISAAERAEFRCIERERQALLSFKQELEYPSGLLSSWGSEEGQKSDCCKWVGVGCNNRTDRITMLDLHGLAVG GNITDSLLELQHLNYLDLSDNSFYGNPFPSFVGSLRKLRYLSLSNNGLIGRLSYQLGNLSSLQSLDLSYNFDVSFESLDWLSRLSFLEHLHLTGNHLTQA SDWIQVVNKLPRLKDLQLSDCSLLSIVPPALSFVNSSRSLAILDLSFNHLASSIVPWLSNSSDSLVDLDLSANQLQGSIPDAFGKMTSLTNLHLADNQLE GGIPRSFGGMCSLRELDLSSNNLSGPLPRSIRNMHGCVENSLKSLQLRDNQLHGSLPDFTRFSSVTELDLSHNKLNGSLPKRFRQRSELVSLNLSDNQLT GSLPDVTMLSSLREFLIYNNRLDGNASESIGSLSQLEKLNVGRNSLQGVMSEAHFSNLSKLQELDLSHNSLVLKFTYDWAPPFLLNYLYLSSCNLGPHFP QWLRNQNNLWVLDISGTGISDTIPNWFWDLSNSSLTLLNFSHNNMRGMLPDLSSKYAEIVGVDLSSNQFEGPLPTFPLQTIALDLSNNMFSGPNSAICKI AGPQLISLDLSKNLLSGNLPNSLIPFDGLAFLDLAHNNCSGRIPRSLGSLLMLRTLNLHLSINKLRSKIPAWMGESLLSLKFLFLQSNEFYGSIPSHFCR QRHIKILNLSLNNISGIIPRCLDNYTAMIQKGELTDINSGELGLGQPGQHVNKAVVDWKGRQYEYVRSLGLFRIIDFAGNKLTGEIPEEITSLLQLVALN LSGNNLTGGIPLKIGQLKQLESLDLSGNQLSGVIPSSTASLSFLSYLNLSYNNLSGKIPSGTQLQSFNASAFAGNLALCGLPVTHKCPGDEATPRPLAND DNQGNETVVDEFRRWFYTALGIGFGVFFWGVSGALLLKRSWRHAYFRFLDEAWDWIYVKIAVQKARLQQIYLRLLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34930			disease resistance family prot...		Potri.015G028600 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Potri.019G021024 [exp]	17.02	0.7690
AT1G68840	AP2_ERF	EDF2, RAV2, RAP...	TEMPRANILLO 2, RELATED TO AP2 ...		Potri.014G068000 [exp]	24.08	0.6934
AT5G17680			disease resistance protein (TI...		Potri.019G069200 [exp]	32.32	0.7327
AT5G46470		RPS6	RESISTANT TO P. SYRINGAE 6, di...		Potri.019G097640 [exp]	37.28	0.7170
AT3G14470			NB-ARC domain-containing disea...		Potri.017G015600 [exp]	38.47	0.6820
AT4G31980			unknown protein		Potri.001G017900 [exp]	52.86	0.7118
AT1G65790		ARK1	receptor kinase 1 (.1)		Potri.004G024316 [exp]	54.07	0.6792
					Potri.006G031300 [exp]	56.00	0.6319
AT3G57770			Protein kinase superfamily pro...		Potri.005G106600 [exp]	58.24	0.6314
AT3G14470			NB-ARC domain-containing disea...		Potri.017G015200 [exp]	61.76	0.6826

Compare expression of checked genes

Potri.015G028600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.