Plant FIBer expression Database

Potri.015G028700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G61260 67 / 2e-12 Protein of unknown function (DUF761) (.1)
AT5G54300 67 / 2e-12 Protein of unknown function (DUF761) (.1)
AT4G04990 49 / 2e-06 Protein of unknown function (DUF761) (.1)
AT1G11230 41 / 0.0009 Protein of unknown function (DUF761) (.1), Protein of unknown function (DUF761) (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G037001
[exp]
285 / 3e-96 AT5G54300 70 / 9e-14 Protein of unknown function (DUF761) (.1)
Potri.001G406600
[exp]
74 / 1e-14 AT1G61260 192 / 1e-58 Protein of unknown function (DUF761) (.1)
Potri.011G044000
[exp]
73 / 3e-14 AT1G61260 227 / 7e-72 Protein of unknown function (DUF761) (.1)
Potri.011G126900
[exp]
69 / 7e-13 AT1G61260 182 / 1e-54 Protein of unknown function (DUF761) (.1)
Potri.004G035700
[exp]
50 / 6e-07 AT1G61260 135 / 4e-37 Protein of unknown function (DUF761) (.1)
Potri.011G083600
[exp]
40 / 0.0008 AT2G34610 52 / 7e-08 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018444
[exp]
74 / 3e-14 AT5G54300 212 / 6e-65 Protein of unknown function (DUF761) (.1)
Lus10011239
[exp]
66 / 6e-12 AT1G11220 232 / 1e-73 Protein of unknown function (DUF761) (.1)
Lus10020090
[exp]
61 / 4e-10 AT1G61260 101 / 6e-24 Protein of unknown function (DUF761) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05553 DUF761 Cotton fibre expressed protein
PF14364 DUF4408 Domain of unknown function (DUF4408)
Representative CDS sequence
>Potri.015G028700.1 pacid=42775731 polypeptide=Potri.015G028700.1.p locus=Potri.015G028700 ID=Potri.015G028700.1.v4.1 annot-version=v4.1
ATGGCCAGCTTCTTTGAAATTTCTTCTTTCAATACAAGCAGATTTGAGACAGCAATTTGGGCTGTGAAGTTGGTGCTTCTCTCTGTGGGGATCATTTCCA
CTTTTATTTTGTTCAAAGTGGCTATAATTCCTTGCACATTTAATCTAATTCTCTCCACTCTTCCTAGCGTGTGGATCTCCCTCCGTGGCTGGTTATCACC
ACCTTACATCTACATCATCGTCAACTTTATCATCATCACCATTGTTGCTTCCTCCACATTTCAACACCCAAACCCCGATACCAAATTACCCTATTCTAGT
TCTAAGAAACTCAAAAGCCAAAACCAAAGTAGCACCAATCATGCGAATGATCTCTGGCAAGAGCATGACATGCAAGAAGTGGAAAAACAATTGGGTACCA
TTTTGTCCTTTGAGATACCCATCGACTCTTCTCAGGATTATTACTCTCCTGACACTTTCTTGACAAATTCTGGTAAAGAACTGCAAGAAAAGACGAATAC
AGACCCATCCAAGGATCCATGCCCTCCTGACTCTTGCTTGACAGATTCTGCTAAAAAACAGCAAAAAAAGATGGACATGGAGCCACTGACACAAGAGGCA
GATCAGCAGGACACCCTGGAGGACGCATGGACATCAATTATGGAGAAGCAAGGGAAGACACCAACAAGGCAGTTAAGGAAGATTGGCACATGGGACACAC
CTCCAAAGGTGTTGCAAAAAGTCAATGGAATTGTTACTGCTGATGGTGGTGGTGGTTGCGGCGATGATGATGATCCGGTGTCTTGGGCTAGGAGAGAACT
GAAGAAATCAGACACGTTTAATGATTCTGTTTCTTTAAGGAGGGAGAAGTCGATGAGTCAGGATGAGTTGAACCGGCGAGTAGAAGAGTTTATCAGAAAG
TTTAATCATGAAATGAGGCTCCAAAGGCAGGAATCTGAACAGAGAGTCAGGGAAATGAACGTCCACGGTGGGGTTTGGTAG
AA sequence
>Potri.015G028700.1 pacid=42775731 polypeptide=Potri.015G028700.1.p locus=Potri.015G028700 ID=Potri.015G028700.1.v4.1 annot-version=v4.1
MASFFEISSFNTSRFETAIWAVKLVLLSVGIISTFILFKVAIIPCTFNLILSTLPSVWISLRGWLSPPYIYIIVNFIIITIVASSTFQHPNPDTKLPYSS
SKKLKSQNQSSTNHANDLWQEHDMQEVEKQLGTILSFEIPIDSSQDYYSPDTFLTNSGKELQEKTNTDPSKDPCPPDSCLTDSAKKQQKKMDMEPLTQEA
DQQDTLEDAWTSIMEKQGKTPTRQLRKIGTWDTPPKVLQKVNGIVTADGGGGCGDDDDPVSWARRELKKSDTFNDSVSLRREKSMSQDELNRRVEEFIRK
FNHEMRLQRQESEQRVREMNVHGGVW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G61260 Protein of unknown function (D... Potri.015G028700
[exp]
0 1
AT2G45550 CYP76C4 "cytochrome P450, family 76, s... Potri.003G118200
[exp]
8.24 0.8367
AT4G24050 NAD(P)-binding Rossmann-fold s... Potri.001G086900
[exp]
11.04 0.8378
AT5G48130 Phototropic-responsive NPH3 fa... Potri.014G164000
[exp]
22.62 0.8300
AT3G45080 P-loop containing nucleoside t... Potri.011G048700
[exp]
25.15 0.8324
AT5G10970 C2H2ZnF C2H2 and C2HC zinc fingers sup... Potri.003G180600
[exp]
29.94 0.7707
AT2G36470 Plant protein of unknown funct... Potri.004G098000
[exp]
42.47 0.8039
AT5G06750 Protein phosphatase 2C family ... Potri.006G192600
[exp]
42.73 0.7308
AT1G25530 Transmembrane amino acid trans... Potri.008G118000
[exp]
43.72 0.8200
AT1G09030 CCAAT NF-YB4 "nuclear factor Y, subunit B4"... Potri.013G019600
[exp]
53.75 0.8104
AT4G40050 Protein of unknown function (D... Potri.005G072200
[exp]
58.08 0.7082

Potri.015G028700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.