Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48410 1549 / 0 AGO1 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) AT5G43810 1431 / 0 PNH, ZLL, AGO10 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) AT2G27880 1040 / 0 AGO5 ARGONAUTE 5, Argonaute family protein (.1) AT1G69440 578 / 0 ZIP, AGO7 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) AT5G21150 510 / 2e-165 AGO9 ARGONAUTE 9, Argonaute family protein (.1) AT2G27040 503 / 4e-162 OCP11, AGO4 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) AT2G32940 485 / 5e-156 AGO6 ARGONAUTE 6, Argonaute family protein (.1) AT1G31280 449 / 8e-141 AGO2 argonaute 2, Argonaute family protein (.1) AT5G21030 439 / 9e-139 PAZ domain-containing protein / piwi domain-containing protein (.1) AT1G31290 426 / 2e-130 AGO3 ARGONAUTE 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G037100 [exp] 1754 / 0 AT1G48410 1560 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.008G158800 [exp] 1440 / 0 AT5G43810 1688 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.010G081300 [exp] 1438 / 0 AT5G43810 1663 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.001G213700 [exp] 1106 / 0 AT2G27880 1214 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.009G001500 [exp] 1094 / 0 AT2G27880 1192 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.006G118600 [exp] 1038 / 0 AT2G27880 1068 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.010G163800 [exp] 620 / 0 AT1G69440 1304 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Potri.008G010500 [exp] 526 / 4e-171 AT2G27040 1281 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.016G024200 [exp] 520 / 1e-168 AT2G27040 1246 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031331 [exp] 1661 / 0 AT1G48410 1621 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10017983 [exp] 1597 / 0 AT1G48410 1602 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10041978 [exp] 1577 / 0 AT1G48410 1579 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10031904 [exp] 1513 / 0 AT1G48410 1481 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10006627 [exp] 1436 / 0 AT5G43810 1658 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10039386 [exp] 1434 / 0 AT5G43810 1647 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10014386 [exp] 742 / 0 AT2G27880 773 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Lus10037136 [exp] 616 / 0 AT1G69440 1267 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10036794 [exp] 615 / 0 AT1G69440 1251 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10036795 [exp] 612 / 0 AT1G69440 1248 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0638 [poplar] [flax] PAZ PF02170 [poplar] [flax] PAZ PAZ domain CL0219 [poplar] [flax] RNase_H PF02171 [poplar] [flax] Piwi Piwi domain CL0219 [poplar] [flax] PF08699 [poplar] [flax] ArgoL1 Argonaute linker 1 domain CL0219 [poplar] [flax] PF12764 [poplar] [flax] Gly-rich_Ago1 Glycine-rich region of argonaut CL0219 [poplar] [flax] PF16486 [poplar] [flax] ArgoN N-terminal domain of argonaute CL0219 [poplar] [flax] PF16487 [poplar] [flax] ArgoMid Mid domain of argonaute CL0219 [poplar] [flax] PF16488 [poplar] [flax] ArgoL2 Argonaute linker 2 domain
Representative CDS sequence Show only first row Show all	>Potri.015G029000.3 pacid=42776281 polypeptide=Potri.015G029000.3.p locus=Potri.015G029000 ID=Potri.015G029000.3.v4.1 annot-version=v4.1 ATGGTGAGGAAGAGGAGAACGGAACTTCCACGAAGTGGGGGTGAGAGTTCTGAGTCCCAGGAAACTGGTGCTGGTCGGGGTGCTCAGCCCCCAGCTGAGA GGAGCGGTCCTCCTCAACAGGGAGGAGGTGGAGGAGGATACCAAGGTGGAAGGGGTCCCCAGTCTCAGCAGGTAGGCCGTGGAGGTGGTTACGGTGGCGG CCGAGGAAGGGGAGGAATGCAACAACAGCATTATGGTGGAGCTCCGGAATACCAGGGACGGGGGAGAGGGCAACCTCAGCATGGAGAACGAGGTTATGGC AGTGGTCGTAGTGGAGGTGGCCGAGGAGGACCCCCTTCAGGCGGACCATTTAGAGCACCAGCACCCGAGCTGCACCAAGCTACTCCAGCTCCTTACCCAG CTGGGATGACCCCTCAGCCCATGCCATCTGAGGCACGTTCTTCAATGCCCATGCTGTCTGAGGCAAGTTCTTCAATGCAACCACTAGAGCCATCACCAGC GGCTGTGTCACAGCAGATGCAACAACTATCAATCCAGCAAGAAGGCTCTTCTAGCCAGGCAACTCAGCCACCGCCAGCCTCAAGTAAATCAATGAGGTTC CCTCTTCGGCCTGGGAAGGGAAGCACTGGCATAAGGTGTATTGTAAAGGCTAATCACTTTTTTGCTGAGCTACCAGACAAGGATTTGCACCAGTATGATG TTAGCATTACACCGGAGGTTTCATCAAGGGGTGTCAATCGAGCTGTAATGGCACAACTGGTTAAATTGTACCAGGAATCCCATCTCGGAAAGCGTCTTCC TGCATATGATGGACGTAAGAGTCTTTATACTGCTGGGGCTCTTCCTTTTCAAGCAAAGGAATTCAAAATCATCCTCATTGACGAGGATGATGGAACAGGC GGACAAAGGAGAGAGAGGGAATTCAAAGTTGTCATCAAATTTGCTGCTCGTGCTGATCTGCACCATCTAGGACTCTTTTTGCAGGGAAAGCAAGCTGATG CACCTCAGGAAGCCCTTCAAGTCCTTGATATAGTGCTGCGTGAATTGCCAACTGCTAGGTACTGCCCGGTGGGTCGATCATTTTATTCCCCTGATCTAGG AAGGAGACAGTCTCTTGGTGAGGGCTTGGAGAGTTGGCGTGGTTTCTATCAAAGTATTCGTCCTACACAGATGGGACTCTCACTCAATATTGATATGTCC TCAACTGCATTCATTGAGCCACTACCAGTTATTGATTTTGTGACTCAATTATTGAATCGAGATGTTTCCTCCAGACCGTTGTCTGATTCTGATCGTATAA AGATTAAAAAGGCTCTCAGAGGTGTCAGAGTTGAAGTTACACACCGTGGAAATATGCGCAGAAAGTATCGTATATCTGGTTTAACATCACAGGCAACACG GGAGCTGACTTTCCCGGTTGATGAAAGAGGAACATTGAAATCTGTTGTGGAGTATTTTTATGAAACCTATGGCTTTGTAATTCAACATACTCAATGGCCT TGTCTACAAGTGGGAAATCAACAGAGACCTAACTATTTGCCTATGGAGGTTTGTAAGATTGTTGAGGGTCAGAGGTACTCCAAAAGATTGAATGAAAGAC AGATCACTGCGTTGTTGAAGGTGACTTGCCAACGTCCTCAAGAAAGGGAACGAGATATCATGCAGACGGTTTATCACAATGCATATCACAACGATCCTTA CGCCAAGGAGTTTGGTATAAGAATTAGCGAGAAGCTTGCTTCAGTTGAAGCTCGCATTCTGCCTCCTCCATGGCTCAAGTATCATGATACAGGCAGGGAG AAAGATTGTCTTCCTCAAGTTGGGCAGTGGAACATGATGAATAAGAAAATGGTTAATGGAGGCAGAGTCAATAATTGGATTTGCATCAATTTTTCAAGGA CTGTCCAGGACAGTGTGGCCCGAGGATTTTGCTATGAGCTTGCACAAATGTGCCACATTTCTGGCATGGACTTTGCTCTTGAGCCATTGCTTCCTCCTGT TGGTGCTCGTCCTGAGCAAGTAGAAAGGGTTTTGAAAACCCGATACCATGATGCAATGACAAAACTCCAGCCACATAGCAAGGAACTTGACTTGCTCATT GTGATTCTCCCGGATAACAATGGTTCTCTTTACGGTGATTTGAAGCGAATTTGTGAGACAGATCTTGGGCTTGTTTCTCAGTGCTGCTTGACAAAGCATG TATTCAAAATGAGCAAGCAATATCTGGCCAATGTGGCTCTGAAGATAAATGTGAAGGTTGGAGGAAGGAATACTGTTCTTGTTGATGCATTATCAAGACG TATTCCTCTAGTCAGCGACCGACCTACTATTATTTTTGGTGCTGACGTTACTCATCCTCATCCTGGGGAGGACTCAAGCCCATCCATTGCAGCTGTTGTG GCTTCTCAAGATTGGCCAGAGGTTACTAAGTATGCTGGCCTGGTTTGTGCTCAAGCCCATCGCCAAGAGCTTATCCAAGATTTATATAAAACATGGCAGG ATCCTGTACGAGGGACAGTGTCTGGTGGCATGATCAAGGAACTTCTCATATCTTTCCGGAGAGCCACAGGGCAGAAGCCTCAGAGAATTATATTCTACAG AGATGGTGTCAGTGAAGGGCAGTTCTATCAAGTTTTGTTGCACGAACTTGATGCAATTCGTAAGGCATGTGCTTCTTTAGAGCCCAACTACCAGCCTCCA GTGACATTTGTTGTGGTTCAGAAGCGTCATCACACAAGGCTGTTTGCAAATGATCACCGTGACCGTAATGCTGTTGACCGGAGCGGGAATATATTGCCTG GTACTGTTGTGGACTCAAAAATTTGTCACCCAACAGAGTTCGACTTCTATTTGTGTAGTCATGCTGGGATTCAGGGTACAAGCCGTCCAGCTCATTACCA TGTACTTTGGGATGAGAACAAGTTCACTGCTGATGGGTTGCAGTCTCTTACAAACAATCTTTGCTACACATATGCAAGATGCACGCGTTCTGTTTCCATT GTGCCACCTGCATACTATGCACATCTTGCTGCATTCCGAGCTCGTTTCTACATGGAACCGGAGACATCAGACAGTGGATCGCTTACAAGTGGCATGGCTT CTGGACGAGGAGGTGGAGGAGCAGGTGGTCGAGCCACTCGCGGACCTGCTGCCAATGCTGCTGTGAGGCCCCTGCCTGCCTTGAAGGAGAATGTCAAGCG GGTTATGTTCTACTGTTAG
AA sequence Show only first row Show all	>Potri.015G029000.3 pacid=42776281 polypeptide=Potri.015G029000.3.p locus=Potri.015G029000 ID=Potri.015G029000.3.v4.1 annot-version=v4.1 MVRKRRTELPRSGGESSESQETGAGRGAQPPAERSGPPQQGGGGGGYQGGRGPQSQQVGRGGGYGGGRGRGGMQQQHYGGAPEYQGRGRGQPQHGERGYG SGRSGGGRGGPPSGGPFRAPAPELHQATPAPYPAGMTPQPMPSEARSSMPMLSEASSSMQPLEPSPAAVSQQMQQLSIQQEGSSSQATQPPPASSKSMRF PLRPGKGSTGIRCIVKANHFFAELPDKDLHQYDVSITPEVSSRGVNRAVMAQLVKLYQESHLGKRLPAYDGRKSLYTAGALPFQAKEFKIILIDEDDGTG GQRREREFKVVIKFAARADLHHLGLFLQGKQADAPQEALQVLDIVLRELPTARYCPVGRSFYSPDLGRRQSLGEGLESWRGFYQSIRPTQMGLSLNIDMS STAFIEPLPVIDFVTQLLNRDVSSRPLSDSDRIKIKKALRGVRVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTLKSVVEYFYETYGFVIQHTQWP CLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPQERERDIMQTVYHNAYHNDPYAKEFGIRISEKLASVEARILPPPWLKYHDTGRE KDCLPQVGQWNMMNKKMVNGGRVNNWICINFSRTVQDSVARGFCYELAQMCHISGMDFALEPLLPPVGARPEQVERVLKTRYHDAMTKLQPHSKELDLLI VILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVV ASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPNYQPP VTFVVVQKRHHTRLFANDHRDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSI VPPAYYAHLAAFRARFYMEPETSDSGSLTSGMASGRGGGGAGGRATRGPAANAAVRPLPALKENVKRVMFYC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Potri.015G029000 [exp]	0	1
AT5G57110		AT-ACA8, ACA8	"AUTOINHIBITED CA2+ -ATPASE, I...		Potri.018G139900 [exp]	5.47	0.6464
AT3G63150		ATCBG, MIRO2	CALCIUM BINDING GTP-ASE, MIRO-...		Potri.005G209000 [exp]	5.56	0.7618
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.003G030000 [exp]	7.87	0.7375
AT5G17410			Spc97 / Spc98 family of spindl...		Potri.010G180700 [exp]	8.30	0.7290
AT4G38640			Plasma-membrane choline transp...		Potri.004G173600 [exp]	14.00	0.6986
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Potri.018G038000 [exp]	15.09	0.7240	MYB222
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.001G358500 [exp]	15.42	0.6479	Pt-ARF6.3
AT2G38430			unknown protein		Potri.019G029800 [exp]	22.97	0.6268
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Potri.003G001000 [exp]	23.36	0.6994	Pt-ARF1.11
AT3G55480		AP-3beta, PAT2	beta-subunit of adaptor protei...		Potri.010G202800 [exp]	24.49	0.6544

Compare expression of checked genes

Potri.015G029000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.