Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73370 1288 / 0 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) AT5G37180 1127 / 0 ATSUS5, SUS5 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) AT4G02280 952 / 0 ATSUS3, SUS3 sucrose synthase 3 (.1) AT5G49190 926 / 0 ATSUS2, SSA, SUS2 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) AT3G43190 887 / 0 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) AT5G20830 877 / 0 ASUS1, ATSUS1, SUS1 sucrose synthase 1 (.1.2) AT1G04920 139 / 1e-33 ATSPS3F sucrose phosphate synthase 3F (.1) AT4G10120 137 / 1e-32 ATSPS4F Sucrose-phosphate synthase family protein (.1.2) AT5G11110 124 / 1e-28 SPSA2, KNS2, ATSPS2F, SPS1 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1) AT5G20280 120 / 2e-27 SPSA1, ATSPS1F sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G037200 [exp] 1584 / 0 AT1G73370 1284 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.004G081300 [exp] 1244 / 0 AT1G73370 1234 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.017G139100 [exp] 1238 / 0 AT5G37180 1231 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) Potri.002G202300 [exp] 962 / 0 AT4G02280 1439 / 0.0 sucrose synthase 3 (.1) Potri.018G063500 [exp] 902 / 0 AT3G43190 1410 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.006G136700 [exp] 902 / 0 AT3G43190 1375 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.013G095500 [exp] 143 / 9e-35 AT4G10120 1513 / 0.0 Sucrose-phosphate synthase family protein (.1.2) Potri.018G025100 [exp] 140 / 1e-33 AT5G20280 1472 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.T124307 [exp] 139 / 3e-33 AT5G20280 1389 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041979 [exp] 1236 / 0 AT1G73370 1190 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10020791 [exp] 1209 / 0 AT1G73370 1200 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10007372 [exp] 1204 / 0 AT1G73370 1195 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10017984 [exp] 1155 / 0 AT1G73370 1117 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10001468 [exp] 930 / 0 AT4G02280 1385 / 0.0 sucrose synthase 3 (.1) Lus10020506 [exp] 917 / 0 AT3G43190 1420 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10012454 [exp] 877 / 0 AT3G43190 1374 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10010308 [exp] 851 / 0 AT5G49190 1318 / 0.0 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) Lus10013417 [exp] 738 / 0 AT4G02280 1162 / 0.0 sucrose synthase 3 (.1) Lus10008205 [exp] 345 / 1e-110 AT4G02280 466 / 2e-159 sucrose synthase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00534 [poplar] [flax] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [poplar] [flax] GT-B PF00862 [poplar] [flax] Sucrose_synth Sucrose synthase
Representative CDS sequence Show only first row Show all	>Potri.015G029100.1 pacid=42776035 polypeptide=Potri.015G029100.1.p locus=Potri.015G029100 ID=Potri.015G029100.1.v4.1 annot-version=v4.1 ATGGCTTCTGCACCAGTCCTCAAGCGATCCGAAACAATTGCTGAAAGCATGCCTGATGCATTAAGGCAGAGCCGGTATCACATGAGGATATGTTTTTCCA GGTTTGTTGCTCCTGGGAGAAGGCTGATGAAGCGCCAACATATAATGGATGAAGTTGATAAATCTATACAAGATAAGAATGAAAGGCAAAAGGTCTTGGA AGGCTTACTTGGTTACATCCTGAGTTCCACTCAGGAGGCAGCTGTTGTTCCACCTTTTGTGGCATTTGCTGTAAGACCGAATCCGGGTTTTTGGGAATAC GTTAAAGTGAACGCTGAAGATTTGAGTGTAGATGGTATCTCCGTTTCAGAATATTTGCAGTTTAAGGAAATGATCTTTGATGAAAAATGGGCGAGCAATG AAAATGCGTTGGAAGTAGATTTTGGAGCTATGGATTTCTCCACCCCTCGCCTTACTCTTTCTTCTTCTATTGGGAATGGACTGAACTACATGTCAAAGTT CATGTCCTCAAAGCTCCGTGGGAATTCCGATGCTGCAAAGCCTCTACTCGACTATTTGTTAGCGCTCGACCATCAAGGGGAGAATCTTATGATCAATCAA GCTCTAGATTCAGTTTCCAAGCTGCAAGCAGCATTGATTGTAGCTGAAGTAGTTGTCTCTGCATTTCCTAAAGACGCCCCATATCAGGATTTCCAGCAGA GCCTGAAAAGGTTGGGCTTTGAGAAGGGATGGGGAGACACCGCAGAAAGAGTCAAAGAGACAATGAGGATGCTTTCTGAATCACTTCAAGCCCCAGAACC AGTGAAACTGGAGTTGCTCTTTAGCAGGATTCCCAACGTGTTCAACATTGTGATCTTCTCTCCTCACGGCTATTTTGGCCAGTCAGATGTCCTCGGGCTG CCAGATACCGGTGGCCAGATTGTTTACATTCTTGATCAAGTAAGAGCATTAGAGGAAGAACTGCTACTTAAAATAAGGCAGCAAGGGCTTAGCGTGAAGC CTCAAATTCTTGTGATAACACGACTGATACCACATGCTGGAGGGACAAAGTGCAACCAGGAGGTGGAGCCTATTTTCGGCACAAAACACTCCCACATTGT TAGGGTCCCCTTCAAGACAGAGAAAGGGGTTCTCCCTCAATGGGTCTCCCGTTTCGATGTATACCCTTACCTCGAGAGATTTGCTCAGGATGCTGCTGAT AAGGTCCGTGAACACATGGACTGTAAACCTGATCTCTTGATCGGGAACTATAGTGATGGGAACTTGGTGGCTTCCCTAATGGCTCAGAAACTTGGCACAA CTCTGGGAACTATTGCTCATGCTTTGGAGAAAACTAAGTACGAAGATTCTGATGCCAAATGGAAGGAATTAGACCCCAAGTACCACTTTTCCTGTCAATT CACAGCAGACATGATTGCGATGAATACTGCTGATTTTATCATAACCAGTACATATCAAGAAATTGCAGGAAGCAAGAATAGACCAGGACAGTATGAAAGC CATGTGGCGTTTACCATGCCAGGACTTTGCCGTGTCGTGTCAGGGATCAATGTCTTTGATCCAAAGTTCAATATTGCTTCCCCTGGGGCTGACCAAACTG TCTACTTCCCCTACACCGAGAAACAGAAGCGGCTAACCTCTTTTCATCCTGCCATTGAAGAACTACTCTATAACAATGAAGATAACAATGAGCACATTGG ATATCTGGCAGACAAGAAGAAACCAATTATCTTCTCCATGGCAAGACTGGATACAGTGAAAAACATTACAGGGCTGACAGAGTGGTATGGAAAAAATGCA AAGCTAAGAAACTTGGTAAATCTCGTTGTTGTAGCAGGATTCTTTGATCCATCTAAATCAAATGATAGAGAGGAAATTGCGGAGATAAAAAAGATGCATT CCTTGATAGAGAAATACCAACTCAAGGGCCAGTTCAGATGGATAGCAGCTCAATCTGACAGATACCGAAACGGAGAGCTATACCGCTGCATTGCAGATAC AAAGGGAGCTTTTATTCAGCCTGCACTCTATGAGGCCTTTGGCCTTACAGTAATTGAGGCAATGAACTGTGGACTACCTACCTTCGCCACCAATCAAGGT GGCCCAGCAGAAATTATTGTTGATGGGATCTCAGGATTCCACATTGACCCCAACAATGGAGATGAGTCTAGCAACAAGATAGCAGATTTCTTCGAGAAGT GCAAGACAGATGCGGAATATTGGAACAAGATGTCAGCAACTGGTCTCCAACGCATCTACGAATGCTATACATGGAAGATTTATGCAAACAAAGTGTTGAA CATGGGATCTGTTTACGGGTTTTGGAGGCAGATGAACAAGGAACAGAAGCTTCTGAAGCAGAGATATATTGAAGCCTTTTACAATCTCCAATTCAGGAAT TTGGCAAGGAACGTTCCAATCCCAGGATTTGCACCACCCGTACAGACACCATCAACTTCAAAAACTAAACCCCAAGAATCAGCACCAACTGCTGTAGCTG AATCTCAGCAATCTCTTCCAACCCAGAGAGCCAAACCGCAAGTACAGGAGGGCCCGGTGCCAGCACCTGAAACTCAGCTAACACAAAGAAAGGCACAACC CCAGCAGCCTCAAAGCCAAAGGAATGGCAACGAAAGTTTAGGGCAAATGGTCATTGCACGACGACAAAGCAGCAGCACACAGAGAAGCTGGAGTTGGTGG TTGTCCAGGATCGCTTCCCTTCTTATAGTTTATTACATCCTGAGGAAGTTGTATTGCTACCTCACATGA
AA sequence Show only first row Show all	>Potri.015G029100.1 pacid=42776035 polypeptide=Potri.015G029100.1.p locus=Potri.015G029100 ID=Potri.015G029100.1.v4.1 annot-version=v4.1 MASAPVLKRSETIAESMPDALRQSRYHMRICFSRFVAPGRRLMKRQHIMDEVDKSIQDKNERQKVLEGLLGYILSSTQEAAVVPPFVAFAVRPNPGFWEY VKVNAEDLSVDGISVSEYLQFKEMIFDEKWASNENALEVDFGAMDFSTPRLTLSSSIGNGLNYMSKFMSSKLRGNSDAAKPLLDYLLALDHQGENLMINQ ALDSVSKLQAALIVAEVVVSAFPKDAPYQDFQQSLKRLGFEKGWGDTAERVKETMRMLSESLQAPEPVKLELLFSRIPNVFNIVIFSPHGYFGQSDVLGL PDTGGQIVYILDQVRALEEELLLKIRQQGLSVKPQILVITRLIPHAGGTKCNQEVEPIFGTKHSHIVRVPFKTEKGVLPQWVSRFDVYPYLERFAQDAAD KVREHMDCKPDLLIGNYSDGNLVASLMAQKLGTTLGTIAHALEKTKYEDSDAKWKELDPKYHFSCQFTADMIAMNTADFIITSTYQEIAGSKNRPGQYES HVAFTMPGLCRVVSGINVFDPKFNIASPGADQTVYFPYTEKQKRLTSFHPAIEELLYNNEDNNEHIGYLADKKKPIIFSMARLDTVKNITGLTEWYGKNA KLRNLVNLVVVAGFFDPSKSNDREEIAEIKKMHSLIEKYQLKGQFRWIAAQSDRYRNGELYRCIADTKGAFIQPALYEAFGLTVIEAMNCGLPTFATNQG GPAEIIVDGISGFHIDPNNGDESSNKIADFFEKCKTDAEYWNKMSATGLQRIYECYTWKIYANKVLNMGSVYGFWRQMNKEQKLLKQRYIEAFYNLQFRN LARNVPIPGFAPPVQTPSTSKTKPQESAPTAVAESQQSLPTQRAKPQVQEGPVPAPETQLTQRKAQPQQPQSQRNGNESLGQMVIARRQSSSTQRSWSWW LSRIASLLIVYYILRKLYCYLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Potri.015G029100 [exp]	0	1
AT4G33490			Eukaryotic aspartyl protease f...		Potri.007G099301 [exp]	2.44	0.9758
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Potri.005G112200 [exp]	3.46	0.9743
AT5G37180		ATSUS5, SUS5	ARABIDOPSIS THALIANA SUCROSE S...		Potri.017G139100 [exp]	4.58	0.9733
AT2G27140			HSP20-like chaperones superfam...		Potri.004G191101 [exp]	6.32	0.9728
AT3G10680			HSP20-like chaperones superfam...		Potri.008G014000 [exp]	7.00	0.9624
AT3G17380			TRAF-like family protein (.1)		Potri.008G005650 [exp]	7.41	0.9675
AT3G18670			Ankyrin repeat family protein ...		Potri.002G048832 [exp]	8.12	0.9539
AT1G68180			RING/U-box superfamily protein...		Potri.015G127600 [exp]	8.83	0.9275
AT2G27140			HSP20-like chaperones superfam...		Potri.004G191200 [exp]	10.58	0.9602
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Potri.002G058700 [exp]	11.31	0.9430	ATGSL11.2

Compare expression of checked genes

Potri.015G029100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.