Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14590 405 / 6e-141 Nucleotide-diphospho-sugar transferase family protein (.1) AT2G02061 371 / 3e-127 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G44820 361 / 6e-124 Nucleotide-diphospho-sugar transferase family protein (.1) AT4G19970 372 / 8e-124 unknown protein AT4G15970 321 / 2e-108 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28700 212 / 4e-66 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28710 210 / 4e-65 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) AT1G28695 194 / 3e-59 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G40900 186 / 3e-56 Nucleotide-diphospho-sugar transferase family protein (.1) AT4G01220 51 / 4e-07 MGP4 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G037300 [exp] 588 / 0 AT1G14590 404 / 1e-140 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.010G099400 [exp] 399 / 2e-138 AT1G14590 490 / 1e-173 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.008G142200 [exp] 390 / 1e-135 AT1G14590 454 / 2e-160 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.012G112600 [exp] 248 / 5e-80 AT1G28710 306 / 6e-104 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.015G110600 [exp] 238 / 2e-76 AT1G28710 300 / 2e-101 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.002G139800 [exp] 238 / 6e-76 AT1G28710 337 / 1e-114 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.014G051600 [exp] 234 / 7e-74 AT1G28710 344 / 5e-117 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.002G166000 [exp] 45 / 6e-05 AT4G01220 524 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Potri.008G186800 [exp] 44 / 0.0002 AT1G70630 668 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031330 [exp] 396 / 3e-137 AT2G02061 359 / 4e-122 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031903 [exp] 394 / 2e-136 AT2G02061 361 / 1e-122 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10019139 [exp] 371 / 3e-128 AT1G14590 406 / 8e-142 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10034422 [exp] 369 / 5e-127 AT1G14590 411 / 2e-143 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031927 [exp] 362 / 6e-126 AT1G14590 386 / 7e-135 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041973 [exp] 303 / 7e-101 AT1G14590 302 / 3e-100 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041977 [exp] 301 / 3e-100 AT1G14590 296 / 9e-98 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10017981 [exp] 298 / 6e-99 AT1G14590 303 / 9e-101 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041976 [exp] 288 / 5e-95 AT1G14590 292 / 4e-96 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10032455 [exp] 202 / 6e-62 AT1G28710 259 / 3e-84 Nucleotide-diphospho-sugar transferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF03407 [poplar] [flax] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Potri.015G029200.3 pacid=42776124 polypeptide=Potri.015G029200.3.p locus=Potri.015G029200 ID=Potri.015G029200.3.v4.1 annot-version=v4.1 ATGACTGGAACTGGTGGCGACAACATGAATGGACCTGTGCACAGTTCTTCTGGGCTCATCCACAAACCGGTTGTCAGAATCACAGTTTTGTTTCTTGGTG TTCTTGCAGTTTCTTGCCTTGTTCTGTACAAGTCTGCCAACCCTTTTGAGTTCCCGCCTAGCTCCTTGGGTTCCTCTGATTCAGATTCACTTTCCGTGTT ATACCATCAAACTTACAAGAGGAAAGTTGATTTGGAATTGGGGAGAGTTTTGAATAAAGCATCCATGAAAGGTAACACTGTGATCTTAACAACATTGAAT GATGCCTGGGCAGAGCCTGGATCTATATTTGATCTCTTCTTGGAGAGTTTTCAAATTGGAGAGAAGACTAAAGAACTCCTAAATAATTTGGTGATAATAT CCTTGGACCAGAAGGCACATGCTCGTTGCTTAGCTATACATCCACATTGCTATGCTCTCAAAACTGAAGGGCTTAATTTTACAAGAGAGGCATCCTTCAT GTCTGAAGATTACCTCAAGATGATGTGGAGAAGAATAGAATTTTTGAACACTGTTCTTGAGATGGGCTACAGCTTTGTTTTCACGGATGCTGATATCATG TGGCTTCGAAATCCATTTCCACGGTTCTATCCACGTGTAGATTTTCAGATAGCATGTGACAAGTATTATGGCAATCCTAAAGACAAAAGCAATCGACCCA ACGGAGGGTTTACCTATGTTAGATCCAATCTCCGGACGATTCTGTTCTACAGGTTTTGGTTCATGTCTAGAAAAACATATCCTGGCAATCATGATCAAGA TGTATTGAACAAGATTAAAAACGATCGTGTCCTTGAAAAGATTGAACTAACGATGAGGTTTCTAGACACTGCTTACTTTGGTGGGTTTTGTGAACGTAGC AAGGATTTTAACAAGGTCTGTACCATGCATGCAAATTGTTGCTATGGTTTGGAGACTAAAGTTCATGATCTTAAAATTGTGCTTGAAGATTGGAAAAATT ACACGTCGTTGCCTCCAAATGAAAGAGCTTCAGCATCGCCCTCTTGGAGAGCTCCTCAAAATTGCAGGACATAA
AA sequence Show only first row Show all	>Potri.015G029200.3 pacid=42776124 polypeptide=Potri.015G029200.3.p locus=Potri.015G029200 ID=Potri.015G029200.3.v4.1 annot-version=v4.1 MTGTGGDNMNGPVHSSSGLIHKPVVRITVLFLGVLAVSCLVLYKSANPFEFPPSSLGSSDSDSLSVLYHQTYKRKVDLELGRVLNKASMKGNTVILTTLN DAWAEPGSIFDLFLESFQIGEKTKELLNNLVIISLDQKAHARCLAIHPHCYALKTEGLNFTREASFMSEDYLKMMWRRIEFLNTVLEMGYSFVFTDADIM WLRNPFPRFYPRVDFQIACDKYYGNPKDKSNRPNGGFTYVRSNLRTILFYRFWFMSRKTYPGNHDQDVLNKIKNDRVLEKIELTMRFLDTAYFGGFCERS KDFNKVCTMHANCCYGLETKVHDLKIVLEDWKNYTSLPPNERASASPSWRAPQNCRT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14590			Nucleotide-diphospho-sugar tra...		Potri.015G029200 [exp]	0	1
AT3G25280			Major facilitator superfamily ...		Potri.002G249100 [exp]	2.64	0.8723
AT2G38400		AGT3	alanine:glyoxylate aminotransf...		Potri.016G132200 [exp]	4.58	0.8577	AGT3.1
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Potri.010G186700 [exp]	8.36	0.8252
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Potri.005G217800 [exp]	8.48	0.8237
AT4G32870			Polyketide cyclase/dehydrase a...		Potri.006G237100 [exp]	8.94	0.8615
AT4G33565			RING/U-box superfamily protein...		Potri.007G111900 [exp]	10.81	0.8224
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Potri.018G083700 [exp]	11.13	0.7905
AT5G46295			unknown protein		Potri.011G079900 [exp]	11.95	0.8196
AT5G12300			Calcium-dependent lipid-bindin...		Potri.009G070400 [exp]	13.85	0.8158
AT2G33360			Protein of unknown function (D...		Potri.010G066200 [exp]	14.24	0.7934

Compare expression of checked genes

Potri.015G029200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.