Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73220 519 / 2e-180 1-Oct, ATOCT1 organic cation/carnitine transporter1 (.1) AT1G79360 308 / 2e-98 2-Oct, ATOCT2 ORGANIC CATION TRANSPORTER 2, organic cation/carnitine transporter 2 (.1) AT1G16390 290 / 1e-91 3-Oct, ATOCT3 organic cation/carnitine transporter 3 (.1) AT1G79410 261 / 2e-80 5-Oct, ATOCT5 organic cation/carnitine transporter5 (.1) AT3G20660 259 / 8e-80 4-Oct, ATOCT4 organic cation/carnitine transporter4 (.1) AT1G16370 249 / 1e-75 6-Oct, ATOCT6 ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6, organic cation/carnitine transporter 6 (.1) AT3G51490 52 / 8e-07 TMT3 tonoplast monosaccharide transporter3 (.1.2) AT1G20840 48 / 1e-05 AtTMT1, TMT1 tonoplast monosaccharide transporter1 (.1) AT1G08890 47 / 3e-05 Major facilitator superfamily protein (.1) AT1G08900 46 / 7e-05 Major facilitator superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G037400 [exp] 773 / 0 AT1G73220 473 / 1e-162 organic cation/carnitine transporter1 (.1) Potri.010G174400 [exp] 283 / 8e-89 AT1G16390 627 / 0.0 organic cation/carnitine transporter 3 (.1) Potri.011G130533 [exp] 262 / 1e-80 AT3G20660 708 / 0.0 organic cation/carnitine transporter4 (.1) Potri.016G039000 [exp] 254 / 7e-78 AT1G16390 444 / 7e-152 organic cation/carnitine transporter 3 (.1) Potri.010G174300 [exp] 246 / 7e-75 AT1G79360 447 / 5e-153 ORGANIC CATION TRANSPORTER 2, organic cation/carnitine transporter 2 (.1) Potri.007G003000 [exp] 56 / 7e-08 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.001G185300 [exp] 51 / 1e-06 AT1G79820 723 / 0.0 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) Potri.005G098900 [exp] 47 / 3e-05 AT4G35300 759 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.005G040000 [exp] 47 / 3e-05 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013330 [exp] 266 / 4e-82 AT3G20660 611 / 0.0 organic cation/carnitine transporter4 (.1) Lus10014801 [exp] 260 / 6e-80 AT3G20660 704 / 0.0 organic cation/carnitine transporter4 (.1) Lus10000286 [exp] 137 / 3e-36 AT1G16390 334 / 4e-112 organic cation/carnitine transporter 3 (.1) Lus10026758 [exp] 62 / 4e-10 AT3G20660 199 / 7e-60 organic cation/carnitine transporter4 (.1) Lus10025543 [exp] 50 / 1e-07 AT3G20660 127 / 8e-36 organic cation/carnitine transporter4 (.1) Lus10005217 [exp] 51 / 2e-06 AT3G20660 221 / 2e-76 organic cation/carnitine transporter4 (.1) Lus10018992 [exp] 50 / 3e-06 AT3G13050 464 / 2e-160 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10033336 [exp] 49 / 7e-06 AT3G13050 485 / 2e-168 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10010886 [exp] 49 / 1e-05 AT3G51490 822 / 0.0 tonoplast monosaccharide transporter3 (.1.2) Lus10001386 [exp] 48 / 2e-05 AT4G35300 1074 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.015G029400.1 pacid=42776538 polypeptide=Potri.015G029400.1.p locus=Potri.015G029400 ID=Potri.015G029400.1.v4.1 annot-version=v4.1 ATGGAAGAAGCAGCACAAAATCTTGGGCATGGAAACAAACAGTTAGCAGAAAGAGTAGCATCATCAACAACAAGAAACCTAGAGCTAACAGTGGAGGCGG TGGTAGAGGAGTATGTAGGATCCATGGGGTGGTCACAATTTTTGCATGTGTTCTTGGTTTCGATAGCATGGGTATTTGATTCCCAAAACACATTGGTTAC TATCTTCAGTGATGCTCAACCGACATCTTGGAGATGCATAAATAATTCGTCATCGTCTCTGTGCATGTCTAGTAGCAGCAGAGGTGATGTTTCTTCTGTT TGTGGATTGACACCAGGCACTTGGGAATGGGTTGGTGGCCATGAAAGTTCCATTGTTGCTGAATGGGGTCTTATTTGTGACCGCAGGTTCCTTGCAGCTA TACCTGCCTCACTGTTCTTTATTGGTTCTCTCTTCGGTTCTGCTTTTTTTGGCTGCTTAGCAGATGCATCCCTCGGCCGAAAAAGAACAGTGCTGCTCTC ATGTATCCTGTCCTCTGCCACTGCTTTCCTCACATCCCTCTCACCGAACATTTGGATATACGCATTGCTTCGATTCGCGAATGGTTTTTCTCGATCTGGA ATAGGAATTTGTTGTATTGTTCTAGCTACAGAGGTTGTCGGACGCAAATGGCGCGGTCCAGTCAGCCAATATGGCTTCTTCTTCTTCACTGCAGGATTTT TTTCCCTTCCTCTAATTGCCTATCCTACAAGAGCTAATTGGAGGAATTTATACAGAATCATATCACTTCTTCCTCTATCCTACTCAGTTTTGTTCTTCCC TTTTGTATCAGAATCTCCGCGCTGGCTTCTTGTTAGGGGAAGGAGCAAAGAAGCCCTCGATGTTTTGAAAACATTCGCCAGGCGTAATGGCAAGACACTT CCTGAAAACCTCTCTCTTTTGAATCCTTCAGAACCTAAAGAGGGTGGTGAAAATGAAGCATTGACAAAAACATGCACCAAAGAAAGCCTGTGGAGGACAA AATGGGCTGCTAAAAGAATGATCACAGTTATGATAGCAGGTTTTGGAGTTGGTTTTGTTTACTATGGTGTTCAACTGAATGTTGAGAACCTGAATTTCAA CCTTTATTTCTCTGTTGGGATCAATGCATTGATGGAAATTCCTGCAATTGTCTTCGGTACTATACTGTTAGGCCTCACTAGCCGGCGACTTCTCTTCTCA CTATCTGCTTTTCTAGCTGGGATTTCGTGCCTTCTTTGCATCATTTTTGCTCATGGAAAACACGTAAAGAAGGCAGAAAAATCCAGTGCGGGGAGTTGGG CTCAACTGATTATCGAAGGAATTGGTTTCATGGCTGCTTCAATAGCATTTGATGTCTTGTATATTTATTGTGTTGAGCTCTTCCCTACCAACGTGAGAAA CTTTGCTTTGTCACAGTCAAGACTATCCTTGATGTTGGGTGCTTCTATAGCACCTTTGCTAGTTGCTGCTGGTCGCTTAAGCCCGTCTCTTTCTTTCCTC ATATTTGGGATCCTCTCCATTTTTAGTGGAGTTGTAAGCTTGTGGCTACCTGAGACAAAAAACGCTCCGCTTTATGACTCTTTGAAGCAACAAGAAGAAG AGGAGAAACACAGAGCTGCGGGTCAAGGTAATATTCTGGCGTAG
AA sequence Show only first row Show all	>Potri.015G029400.1 pacid=42776538 polypeptide=Potri.015G029400.1.p locus=Potri.015G029400 ID=Potri.015G029400.1.v4.1 annot-version=v4.1 MEEAAQNLGHGNKQLAERVASSTTRNLELTVEAVVEEYVGSMGWSQFLHVFLVSIAWVFDSQNTLVTIFSDAQPTSWRCINNSSSSLCMSSSSRGDVSSV CGLTPGTWEWVGGHESSIVAEWGLICDRRFLAAIPASLFFIGSLFGSAFFGCLADASLGRKRTVLLSCILSSATAFLTSLSPNIWIYALLRFANGFSRSG IGICCIVLATEVVGRKWRGPVSQYGFFFFTAGFFSLPLIAYPTRANWRNLYRIISLLPLSYSVLFFPFVSESPRWLLVRGRSKEALDVLKTFARRNGKTL PENLSLLNPSEPKEGGENEALTKTCTKESLWRTKWAAKRMITVMIAGFGVGFVYYGVQLNVENLNFNLYFSVGINALMEIPAIVFGTILLGLTSRRLLFS LSAFLAGISCLLCIIFAHGKHVKKAEKSSAGSWAQLIIEGIGFMAASIAFDVLYIYCVELFPTNVRNFALSQSRLSLMLGASIAPLLVAAGRLSPSLSFL IFGILSIFSGVVSLWLPETKNAPLYDSLKQQEEEEKHRAAGQGNILA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73220		1-Oct, ATOCT1	organic cation/carnitine trans...		Potri.015G029400 [exp]	0	1
AT2G37130			Peroxidase superfamily protein...		Potri.006G129900 [exp]	1.41	0.8202
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Potri.009G061100 [exp]	3.74	0.8088	Pt-FRD3.1
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Potri.016G134600 [exp]	4.89	0.7916
AT2G39510			nodulin MtN21 /EamA-like trans...		Potri.010G209200 [exp]	5.47	0.7657
AT4G40070			RING/U-box superfamily protein...		Potri.008G025300 [exp]	15.87	0.6808
AT1G49470			Family of unknown function (DU...		Potri.009G108900 [exp]	17.46	0.7804
AT2G18960		OST2, PMA, AHA1	PLASMA MEMBRANE PROTON ATPASE,...		Potri.018G090300 [exp]	19.36	0.6993	Pt-VHA2.2
AT2G41480			Peroxidase superfamily protein...		Potri.018G131600 [exp]	20.19	0.7128
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Potri.005G208500 [exp]	22.80	0.7396
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.007G056400 [exp]	23.87	0.7358	Pt-ATHK1.2

Compare expression of checked genes

Potri.015G029400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.