Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16780 308 / 8e-108 Ribosomal protein L19e family protein (.1) AT1G02780 308 / 1e-107 EMB2386 embryo defective 2386, Ribosomal protein L19e family protein (.1) AT4G02230 302 / 2e-105 Ribosomal protein L19e family protein (.1) AT4G16030 69 / 5e-15 Ribosomal protein L19e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G037500 [exp] 331 / 8e-117 AT1G02780 317 / 2e-111 embryo defective 2386, Ribosomal protein L19e family protein (.1) Potri.004G078000 [exp] 324 / 5e-114 AT1G02780 309 / 4e-108 embryo defective 2386, Ribosomal protein L19e family protein (.1) Potri.017G140800 [exp] 322 / 4e-113 AT3G16780 315 / 2e-110 Ribosomal protein L19e family protein (.1) Potri.015G037100 [exp] 238 / 2e-80 AT1G02780 201 / 5e-66 embryo defective 2386, Ribosomal protein L19e family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016829 [exp] 314 / 4e-110 AT3G16780 363 / 2e-129 Ribosomal protein L19e family protein (.1) Lus10038417 [exp] 310 / 2e-108 AT3G16780 348 / 9e-124 Ribosomal protein L19e family protein (.1) Lus10038418 [exp] 304 / 3e-105 AT3G16780 337 / 3e-118 Ribosomal protein L19e family protein (.1) Lus10023387 [exp] 312 / 6e-105 AT3G16780 343 / 1e-116 Ribosomal protein L19e family protein (.1) Lus10037707 [exp] 297 / 4e-100 AT3G16780 343 / 8e-118 Ribosomal protein L19e family protein (.1) Lus10023388 [exp] 286 / 2e-99 AT3G16780 324 / 2e-114 Ribosomal protein L19e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01280 [poplar] [flax] Ribosomal_L19e Ribosomal protein L19e
Representative CDS sequence Show only first row Show all	>Potri.015G029500.1 pacid=42774797 polypeptide=Potri.015G029500.1.p locus=Potri.015G029500 ID=Potri.015G029500.1.v4.1 annot-version=v4.1 ATGGTGTCGTTGAAGCTCCAGAAGCGGCTTTCCGCTAGCGTTCTCAAGTGCGGGAAGGGCAAGGTTTGGCTTGATCCAAATGAAGTCAACGAAATCTCCA TGGCCAACTCTCGTCAAAACATTAGGAAGCTGGTTAAGGATGGTTTCATCATCAGGAAGCCAACAAAGATTCACTCTCGCTCTCGCGCCCGTCGCATGAA GGAAGCCAAGAGAAAGGGAAGACACTCTGGATATGGTAAGCGCAAGGGTACAAGGGAGGCTAGGCTGCCAACTAAGGTTCTCTGGATGAGAAGAATGCGT GTCCTCAGGCGTTTGCTCCGTAAGTACAGGGAGTCAAAGAAGATTGACAAGCACATGTACCATGACATGTACATGAAGGTGAAGGGTAATGTCTTCAAGA ACAAGAGAGTTCTTATGGAGAGCATTCACAAGTCAAAGGCTGAGAAAGCAAGAGAGAAGACTTTGTCTGACCAGTTTGAGGCTAAGAGGGCAAAGAACAA GGCCAGCAGAGAAAGGAAATTTGCCAGGAGGGAGGAACGGTTGGCCCAGGGACCTGGGGCAGAGAAGCCTGTAGCTCCACCGCCTGCTGCTGCTGCTGCA CCTCAACCAGCCCAGGGGGCTAAGAAATCCAAGAAGTAA
AA sequence Show only first row Show all	>Potri.015G029500.1 pacid=42774797 polypeptide=Potri.015G029500.1.p locus=Potri.015G029500 ID=Potri.015G029500.1.v4.1 annot-version=v4.1 MVSLKLQKRLSASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMR VLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREERLAQGPGAEKPVAPPPAAAAA PQPAQGAKKSKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16780			Ribosomal protein L19e family ...		Potri.015G029500 [exp]	0	1
AT5G59240			Ribosomal protein S8e family p...		Potri.009G056900 [exp]	1.00	0.9608	Pt-RPS8.2
AT1G02780		EMB2386	embryo defective 2386, Ribosom...		Potri.012G037500 [exp]	2.00	0.9412	Pt-RPL19.4
AT4G18100			Ribosomal protein L32e (.1)		Potri.014G191000 [exp]	4.00	0.9149
AT3G05560			Ribosomal L22e protein family ...		Potri.005G024400 [exp]	7.74	0.8995
AT1G07070			Ribosomal protein L35Ae family...		Potri.010G194200 [exp]	9.89	0.8999
AT2G37190			Ribosomal protein L11 family p...		Potri.018G145200 [exp]	10.90	0.9109
AT3G13580			Ribosomal protein L30/L7 famil...		Potri.010G250900 [exp]	12.24	0.9200	Pt-RPL7.4
AT2G37600			Ribosomal protein L36e family ...		Potri.004G057000 [exp]	12.48	0.9122	RPL36.1
AT2G39390			Ribosomal L29 family protein ...		Potri.010G212300 [exp]	13.03	0.9124	RPL35.2
AT2G44120			Ribosomal protein L30/L7 famil...		Potri.006G073200 [exp]	13.41	0.8974

Compare expression of checked genes

Potri.015G029500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.