Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17850 528 / 0 Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2) AT2G40760 103 / 1e-23 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT1G09280 79 / 1e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G059400 [exp] 107 / 4e-25 AT2G40760 553 / 0.0 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.005G011300 [exp] 86 / 1e-17 AT1G09280 773 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041981 [exp] 533 / 0 AT1G17850 503 / 1e-176 Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2) Lus10017986 [exp] 529 / 0 AT1G17850 496 / 7e-174 Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2) Lus10029020 [exp] 104 / 3e-24 AT2G40760 568 / 0.0 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10008045 [exp] 84 / 6e-17 AT1G09280 748 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [poplar] [flax] Phosphatase PF00581 [poplar] [flax] Rhodanese Rhodanese-like domain CL0031 [poplar] [flax] PF12368 [poplar] [flax] Rhodanese_C Rhodanase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.015G029600.2 pacid=42775031 polypeptide=Potri.015G029600.2.p locus=Potri.015G029600 ID=Potri.015G029600.2.v4.1 annot-version=v4.1 ATGAGAGGTTCCAGTGCTGCTTGTTGTGCAGCACCCATAAGCGTCTACACTGCTAAAATTGCTTGTAGAAACGAATCTCCCCTCTTCCAATTCAAAATCT TATGTCCTTTTGCTTCACTAACCACCACCTCCATTTTCACAACAGCAAGACCATTTCTTTCTCTTTCACGGTCACAACCCGATAAAGCAAAGCAAAAGCA GAAGTTATGGAAATTTAATTGTGCCACCATTCCTTCAAGTTCAACAGTAGCAAACCCATCTAATGATTTTATAGTTGTCAATTTCTATCGCTTTGTTTTT ATAAACGATCCCCATGAAGAAGTTGCCAAGCACCTCTCTTTCTTAAAGGGCCTTGATATTCATGGGAGAATCTATGTGAATGAACAAGGGATTAATGCTC AGTACAGTGGACCATCAAAAGATGCTCTGGCATATGTTGAATGGTTAAGAGAAGATTTCAGATTTTCTGATATACTGGTTCAGATATCTCCGGCATTAAA TGGGCATGCGTTCCCAAAATTAAAGCTGCGTTACAAACCCTCCTTAGTACAGTTGGAAGGAGGTATTTCACATCTCCCTTTGCTTGATCCTACAATGCGA GCGACACCTCTAGCACCATCCGAGTGGAGAAAAAGATTGAAAGAAGTACATGATTCAAACTGTGTTGTGCTGGATGTTAGAAATGGCTATGAGTGGGATA TTGGTCATTTTCACGGGGCTCAGCGACCTGATGTGGACTGCTTTAGGAGCACTTCATTTGGGGAATCCGATAGTGATGAGGCCATTGCTTCAGATCCTTT AGCAAATGTTGACAAAGAGAAGACAAATATATTGATGTATTGTACAGGAGGCATTCGTTGTGATGTATATTCTACCATCCTAAGACAACGAGGTTTTCAA AATTTGTACACCTTAAAGGGAGGGGTTTCTCATTATCTTCAGAATGAAGGTCCTGTAGAATGGGTCGGGAATTTGTTTGTGTTTGATGATCGTCTTTCTC TTCCACCTTCTGCCTACAACCCTGAGGATACAACAGTACCAAGCAGCAATCCACAAGGATGTAAGAATATTTTATTTGCTAACTGCTACATATGTGGATC ACAAGTCAGCGAGTTAAGACATCGGAACTGTGCCAATATTGACTGCAACCTACTTTTTCTATGTTGTATGGAATGCATAAAGGATTTAAAAGGTTGTTGT TGTCCGCAATGCACAACTGCTCCACGGCTTAGGCCTGTTCTATCCGGGAATCAAAGATACAAGAAATGGTACTTGTATAGAGAACTGGAAGTGCAAAATG AGTTGGCAGTTTGA
AA sequence Show only first row Show all	>Potri.015G029600.2 pacid=42775031 polypeptide=Potri.015G029600.2.p locus=Potri.015G029600 ID=Potri.015G029600.2.v4.1 annot-version=v4.1 MRGSSAACCAAPISVYTAKIACRNESPLFQFKILCPFASLTTTSIFTTARPFLSLSRSQPDKAKQKQKLWKFNCATIPSSSTVANPSNDFIVVNFYRFVF INDPHEEVAKHLSFLKGLDIHGRIYVNEQGINAQYSGPSKDALAYVEWLREDFRFSDILVQISPALNGHAFPKLKLRYKPSLVQLEGGISHLPLLDPTMR ATPLAPSEWRKRLKEVHDSNCVVLDVRNGYEWDIGHFHGAQRPDVDCFRSTSFGESDSDEAIASDPLANVDKEKTNILMYCTGGIRCDVYSTILRQRGFQ NLYTLKGGVSHYLQNEGPVEWVGNLFVFDDRLSLPPSAYNPEDTTVPSSNPQGCKNILFANCYICGSQVSELRHRNCANIDCNLLFLCCMECIKDLKGCC CPQCTTAPRLRPVLSGNQRYKKWYLYRELEVQNELAV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17850			Rhodanese/Cell cycle control p...		Potri.015G029600 [exp]	0	1
AT2G44760			Domain of unknown function (DU...		Potri.002G138600 [exp]	2.82	0.9651
AT4G26370			antitermination NusB domain-co...		Potri.003G222900 [exp]	3.16	0.9595
AT2G31840		MRL7-L	Mesophyll-cell RNAi Library li...		Potri.007G145700 [exp]	3.87	0.9570
AT1G55280			Lipase/lipooxygenase, PLAT/LH2...		Potri.003G218100 [exp]	4.89	0.9408
AT3G12930			Lojap-related protein (.1)		Potri.001G458600 [exp]	5.83	0.9369
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Potri.005G197900 [exp]	5.91	0.9524
AT3G22210			unknown protein		Potri.006G021100 [exp]	7.07	0.9468
AT3G18680			Amino acid kinase family prote...		Potri.005G057700 [exp]	10.19	0.9556
AT3G04310			unknown protein		Potri.010G063300 [exp]	11.83	0.9495
AT1G69200		FLN2	fructokinase-like 2 (.1)		Potri.008G097300 [exp]	21.63	0.9519

Compare expression of checked genes

Potri.015G029600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.