Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17880 231 / 6e-79 ATBTF3 basic transcription factor 3 (.1) AT1G73230 230 / 2e-78 Nascent polypeptide-associated complex NAC (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G037900 [exp] 244 / 4e-84 AT1G73230 225 / 1e-76 Nascent polypeptide-associated complex NAC (.1) Potri.004G078300 [exp] 213 / 7e-72 AT1G73230 197 / 2e-65 Nascent polypeptide-associated complex NAC (.1) Potri.017G141100 [exp] 211 / 5e-71 AT1G73230 196 / 3e-65 Nascent polypeptide-associated complex NAC (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031551 [exp] 217 / 2e-73 AT1G17880 255 / 2e-88 basic transcription factor 3 (.1) Lus10015123 [exp] 216 / 8e-73 AT1G17880 253 / 1e-87 basic transcription factor 3 (.1) Lus10039661 [exp] 215 / 2e-72 AT1G17880 253 / 2e-87 basic transcription factor 3 (.1) Lus10027180 [exp] 203 / 7e-68 AT1G17880 238 / 1e-81 basic transcription factor 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01849 [poplar] [flax] NAC NAC domain
Representative CDS sequence Show only first row Show all	>Potri.015G029800.2 pacid=42775962 polypeptide=Potri.015G029800.2.p locus=Potri.015G029800 ID=Potri.015G029800.2.v4.1 annot-version=v4.1 ATGGATCGGGAGAAGCTTATGAAGATGGCCAGTGCAGTTCGCACTGGTGGAAAGGGTAGTGTGAGAAGGAAGAAGAAGGCTATCCACAAGACTACTACTA CAGATGATAAAAGGCTTCAGAGCACCCTGAAGAGAATTGGAGTGAATGCTATACCTGCAATCGAGGAAGTCAACATATTCAAGGATGACATGGTTATCCA GTTTCTAAATCCCAAAGTGCAAGCATCCATCGCTGCCAACACGTGGGTTGTTAGTGGTGCTCCACAAACTAAGAAATTGCAAGATATTCTTCCTCAGGTT CTCAGTCATTTAGGTCCTGATAACTTGGACAACCTGAAGAAATTGGCGGAGCAGATCCAGAAGCAGTCTACTGGTGCAGGTGCTACTGCAGCAGATGCTG CAGCACAGGATGATGATGATGATGTCCCGGATCTTGTGCCTGGGGAGACCTTTGAAGCTGCAGCAGAGGAGGGTAAAGCTGCTGCTTCTTAG
AA sequence Show only first row Show all	>Potri.015G029800.2 pacid=42775962 polypeptide=Potri.015G029800.2.p locus=Potri.015G029800 ID=Potri.015G029800.2.v4.1 annot-version=v4.1 MDREKLMKMASAVRTGGKGSVRRKKKAIHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDMVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPQV LSHLGPDNLDNLKKLAEQIQKQSTGAGATAADAAAQDDDDDVPDLVPGETFEAAAEEGKAAAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17880		ATBTF3	basic transcription factor 3 (...		Potri.015G029800 [exp]	0	1
AT5G27700			Ribosomal protein S21e (.1)		Potri.013G017600 [exp]	6.40	0.9084
AT3G07590			Small nuclear ribonucleoprotei...		Potri.002G054800 [exp]	6.48	0.8299
AT1G77750			Ribosomal protein S13/S18 fami...		Potri.002G088400 [exp]	6.70	0.8836
AT4G33865			Ribosomal protein S14p/S29e fa...		Potri.009G090000 [exp]	7.07	0.8962
AT2G39390			Ribosomal L29 family protein ...		Potri.010G212300 [exp]	9.16	0.9057	RPL35.2
AT2G47580		U1A	spliceosomal protein U1A (.1)		Potri.014G127800 [exp]	9.27	0.8291	Pt-U1A.2
AT1G57860			Translation protein SH3-like f...		Potri.006G195400 [exp]	10.09	0.9010
AT2G44050		COS1	coronatine insensitive1 suppre...		Potri.017G001800 [exp]	10.09	0.8377	Pt-COS1.2
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Potri.001G131000 [exp]	10.95	0.8982	ATBBC1.2
AT3G13674			unknown protein		Potri.018G082800 [exp]	12.64	0.8577

Compare expression of checked genes

Potri.015G029800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.