Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48405 114 / 4e-29 Kinase interacting (KIP1-like) family protein (.1) AT3G17680 109 / 3e-27 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT1G03080 49 / 3e-06 kinase interacting (KIP1-like) family protein (.1) AT4G02710 49 / 4e-06 Kinase interacting (KIP1-like) family protein (.1) AT3G22790 49 / 4e-06 Kinase interacting (KIP1-like) family protein (.1) AT2G22560 49 / 5e-06 Kinase interacting (KIP1-like) family protein (.1) AT1G03470 47 / 5e-06 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT1G58210 48 / 9e-06 EMB1674 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) AT5G10500 48 / 9e-06 Kinase interacting (KIP1-like) family protein (.1) AT1G09720 47 / 1e-05 Kinase interacting (KIP1-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G038000 [exp] 523 / 0 AT1G48405 109 / 2e-27 Kinase interacting (KIP1-like) family protein (.1) Potri.014G135000 [exp] 52 / 3e-07 AT2G47920 129 / 4e-35 Kinase interacting (KIP1-like) family protein (.1) Potri.019G131000 [exp] 51 / 9e-07 AT2G30500 389 / 4e-129 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.002G207700 [exp] 50 / 1e-06 AT2G47920 136 / 2e-37 Kinase interacting (KIP1-like) family protein (.1) Potri.007G011300 [exp] 50 / 1e-06 AT2G22560 851 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.002G106400 [exp] 50 / 2e-06 AT1G58210 702 / 0.0 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Potri.008G156250 [exp] 48 / 5e-06 AT3G22790 519 / 7e-168 Kinase interacting (KIP1-like) family protein (.1) Potri.013G158100 [exp] 48 / 7e-06 AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.010G083300 [exp] 48 / 8e-06 AT3G22790 1306 / 0.0 Kinase interacting (KIP1-like) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021908 [exp] 52 / 4e-07 AT4G14760 710 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10034448 [exp] 50 / 2e-06 AT5G58320 350 / 2e-114 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) Lus10041192 [exp] 50 / 3e-06 AT4G14760 744 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10019111 [exp] 49 / 3e-06 AT5G58320 347 / 3e-113 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) Lus10025717 [exp] 48 / 8e-06 AT2G22560 497 / 6e-158 Kinase interacting (KIP1-like) family protein (.1) Lus10039359 [exp] 48 / 9e-06 AT3G22790 1402 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10035944 [exp] 48 / 1e-05 AT5G10500 280 / 3e-78 Kinase interacting (KIP1-like) family protein (.1) Lus10014687 [exp] 47 / 3e-05 AT1G03080 938 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10006896 [exp] 47 / 3e-05 AT1G03080 927 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10012730 [exp] 46 / 4e-05 AT2G22560 430 / 9e-134 Kinase interacting (KIP1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07765 [poplar] [flax] KIP1 KIP1-like protein
Representative CDS sequence Show only first row Show all	>Potri.015G030100.1 pacid=42776155 polypeptide=Potri.015G030100.1.p locus=Potri.015G030100 ID=Potri.015G030100.1.v4.1 annot-version=v4.1 ATGGGTGACATCTCTTTACTTCAAAACACCTCAGGTGGGTTACTTACTGATGGAGCTGATGAGAGAGTGAAAATGTTGCTTAAGTACTTCAAATCAGAAG AAGACATGGGATGTGGTGATAGTTTTGCTGAGAGAGCTGAATGGTACTACCAGAAACGCCCTCAACTTCTTGCTTCGCTTCAAGACTTGTACAATGGGTA CACAATCTTGCTGGACAGATGCAATAGAATGGAGAAGGGCAAGAGACTTAGCAAACATCTCTCTTCTCCAATGTCAATCACCTCTGATGATGATCAAGAT CAAGAAGACAGTCGTGGATCTAGCAGCTGCCAGTTTCTTGATTGGGATGCTGAGAGCTCACTGTCTTACCAACAACCACCGACCCCTTTTCAAGATGGAA GTAATACCATTCTTGGCATTGATGAGATTGTAGCGGATCTGGTAATGAAGAATGTAGGGAATGACATATTAGCAGACCAGCTTAGTGACATGGAGAAGCA GCAGCTAGGTCAAGAATCAATATGGAGGAAAGTAGAGTTGTTAAAGAAACTTCTTGAGGTGTTAGAGTCAGAGAGGATAGTGTTACTGAATGAGAATGTT AGATTGGGGTACAAAATGCAAGCTTTATTGGAAGAAAACAAAGGGTTGTCATCTGAGGCTATGTTCATGAAGAGGAAAGCTGGTGAGCTTGCTAGTTGTG TGTTAAAGATGAGGGAGGATCACAGGGTTTGTATGCTAACTAGGAAAATTGAGGATCTTCAAGGGCAGATATATGGGTTGGAGATGAGAAACAAGGAGTA CTATCAACAGTTGTTGAAGAAAGAGGAGCATCAGGAAGATAAAATTAGCAGCAGCAAAGATGGTGGGGTGGCTTTTGTGGGTTGTTGCTTCCAACTGGAG AAGCTGAAGTTGAAGAAAAAGAATGAAGCATATGTTGGGAATGGTGGATGGTCAAAATGGTGGAGCAAGGTCAAGAACATGGACATGTTTTTGTGTGGCT TTCAGTGTTCCCCTTGA
AA sequence Show only first row Show all	>Potri.015G030100.1 pacid=42776155 polypeptide=Potri.015G030100.1.p locus=Potri.015G030100 ID=Potri.015G030100.1.v4.1 annot-version=v4.1 MGDISLLQNTSGGLLTDGADERVKMLLKYFKSEEDMGCGDSFAERAEWYYQKRPQLLASLQDLYNGYTILLDRCNRMEKGKRLSKHLSSPMSITSDDDQD QEDSRGSSSCQFLDWDAESSLSYQQPPTPFQDGSNTILGIDEIVADLVMKNVGNDILADQLSDMEKQQLGQESIWRKVELLKKLLEVLESERIVLLNENV RLGYKMQALLEENKGLSSEAMFMKRKAGELASCVLKMREDHRVCMLTRKIEDLQGQIYGLEMRNKEYYQQLLKKEEHQEDKISSSKDGGVAFVGCCFQLE KLKLKKKNEAYVGNGGWSKWWSKVKNMDMFLCGFQCSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48405			Kinase interacting (KIP1-like)...		Potri.015G030100 [exp]	0	1
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Potri.015G110700 [exp]	2.44	0.9749
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Potri.010G212600 [exp]	3.46	0.9739
AT4G14723		EPFL4, CLL2	epidermal patterning factor li...		Potri.008G157300 [exp]	3.87	0.9715
AT5G50570	SBP	SPL13, SPL13A	SQUAMOSA PROMOTER-BINDING PROT...		Potri.001G058600 [exp]	4.89	0.9274
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Potri.011G076400 [exp]	6.63	0.9699
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Potri.006G220100 [exp]	10.39	0.9344
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G227400 [exp]	10.39	0.9526
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G227300 [exp]	10.95	0.9500
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Potri.008G088000 [exp]	11.61	0.9366
AT3G50390			Transducin/WD40 repeat-like su...		Potri.006G239600 [exp]	12.00	0.9549

Compare expression of checked genes

Potri.015G030100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.