Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	NAC017
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17730 375 / 4e-133 NAC ANAC057 NAC domain containing protein 57 (.1) AT1G65910 279 / 2e-90 NAC ANAC028 NAC domain containing protein 28 (.1) AT5G17260 273 / 5e-90 NAC ANAC086 NAC domain containing protein 86 (.1) AT3G03200 266 / 3e-87 NAC ANAC045 NAC domain containing protein 45 (.1) AT1G54330 236 / 2e-77 NAC ANAC020 NAC domain containing protein 20 (.1) AT5G46590 214 / 3e-69 NAC ANAC096 NAC domain containing protein 96 (.1) AT4G17980 209 / 2e-67 NAC ANAC071 NAC domain containing protein 71 (.1) AT3G10490 201 / 7e-65 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) AT3G10480 207 / 2e-64 NAC ANAC050 NAC domain containing protein 50 (.1.2.3) AT1G32510 199 / 2e-63 NAC ANAC011 NAC domain containing protein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G038100 [exp] 449 / 2e-161 AT3G17730 339 / 4e-118 NAC domain containing protein 57 (.1) Potri.017G139500 [exp] 275 / 3e-88 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.008G081500 [exp] 264 / 5e-88 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1) Potri.010G174600 [exp] 263 / 2e-87 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1) Potri.004G081000 [exp] 270 / 2e-86 AT1G65910 465 / 4e-156 NAC domain containing protein 28 (.1) Potri.003G089800 [exp] 231 / 8e-75 AT4G17980 319 / 6e-109 NAC domain containing protein 71 (.1) Potri.001G144400 [exp] 228 / 2e-73 AT4G17980 318 / 2e-108 NAC domain containing protein 71 (.1) Potri.010G229700 [exp] 217 / 2e-68 AT3G10480 418 / 8e-144 NAC domain containing protein 50 (.1.2.3) Potri.010G229900 [exp] 209 / 2e-64 AT5G04410 481 / 4e-165 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042284 [exp] 373 / 2e-131 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10026373 [exp] 360 / 3e-126 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10007377 [exp] 275 / 3e-88 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1) Lus10020794 [exp] 275 / 2e-86 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10010959 [exp] 252 / 3e-80 AT1G65910 389 / 9e-128 NAC domain containing protein 28 (.1) Lus10030978 [exp] 228 / 1e-73 AT4G17980 273 / 6e-91 NAC domain containing protein 71 (.1) Lus10035373 [exp] 225 / 1e-72 AT4G17980 280 / 2e-93 NAC domain containing protein 71 (.1) Lus10023537 [exp] 213 / 6e-67 AT3G10490 331 / 2e-110 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10037939 [exp] 210 / 6e-66 AT3G10490 415 / 2e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10038670 [exp] 209 / 1e-61 AT3G10490 441 / 5e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.015G030200.1 pacid=42775272 polypeptide=Potri.015G030200.1.p locus=Potri.015G030200 ID=Potri.015G030200.1.v4.1 annot-version=v4.1 ATGTCACCGGTCGGACTGCCTCCTGGCTTTCGATTCCATCCAACCGACGAAGAACTTGTCAATTACTATCTCAAGCGTAAGATTAACGGCCAAGAGATTG AATTAGACATCATTCCTGAGGTTGATCTCTACAAATGTGAGCCCTGGGAATTAGCAGAAAAATCATTCTTTCCAAGTAGAGACCCGGAGTGGTACTTCTT CGGACCCCGGGACAGGAAATACCCTAATGGGTTCAGGACTAATAGAGCAACTAGAGCTGGATACTGGAAGTCGACCGGAAAAGACAGAAGAGTGAACTGC CAGAATAGAGCCATTGGAATGAAGAAGACGTTAGTTTACTACCGAGGCCGAGCTCCTCAAGGGATTCGGACCGATTGGGTAATGCACGAGTATCGGCTCG ACGACAAGGAGTGTGAAGACACCTCTGGAATTCAGGTAGATTCTTATGCATTGTGTCGTGTGTTCAAGAAAAACGGAATATGTTCTGAAATTGAAGAGCA AGGCCAATGCACAAGCACTAGTCTATCATTAATGGAGAGCTCACCACAAGGTGTGATAAATGAGTATGAAACAATGTCGCCAGATGTTCCCATTGCATCA TCATCTTGCGTGGAAGAGGAAGACAAAGATGATTCATGGATGCAGTTCATTACAGACGAGCCATGGTGTTCTTCTAACAACGCCATGGTTGGTGGGGAAG AAATCTCTCATTCGACCTTCACTGACTAA
AA sequence Show only first row Show all	>Potri.015G030200.1 pacid=42775272 polypeptide=Potri.015G030200.1.p locus=Potri.015G030200 ID=Potri.015G030200.1.v4.1 annot-version=v4.1 MSPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAEKSFFPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVNC QNRAIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKECEDTSGIQVDSYALCRVFKKNGICSEIEEQGQCTSTSLSLMESSPQGVINEYETMSPDVPIAS SSCVEEEDKDDSWMQFITDEPWCSSNNAMVGGEEISHSTFTD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17730	NAC	ANAC057	NAC domain containing protein ...		Potri.015G030200 [exp]	0	1	NAC017
AT1G14730			Cytochrome b561/ferric reducta...		Potri.010G102400 [exp]	1.00	0.9930
AT2G37925		COPT4	copper transporter 4 (.1)		Potri.006G093300 [exp]	2.00	0.9881
AT1G54400			HSP20-like chaperones superfam...		Potri.013G054700 [exp]	3.16	0.9844
AT1G23530			unknown protein		Potri.010G041600 [exp]	4.89	0.9876
AT5G41470			Nuclear transport factor 2 (NT...		Potri.002G070800 [exp]	5.65	0.9864
					Potri.005G001001 [exp]	6.00	0.9734
AT1G77700			Pathogenesis-related thaumatin...		Potri.002G087100 [exp]	6.24	0.9796
AT5G22870			Late embryogenesis abundant (L...		Potri.009G003800 [exp]	7.93	0.9819
AT5G35740			Carbohydrate-binding X8 domain...		Potri.006G016800 [exp]	8.00	0.9821
AT1G63310			unknown protein		Potri.011G149100 [exp]	8.12	0.9841

Compare expression of checked genes

Potri.015G030200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.