Plant FIBer expression Database

Potri.015G030600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G17810 709 / 0 PYD1 pyrimidine 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G043300
[exp]
521 / 0 AT3G17810 468 / 9e-167 pyrimidine 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017995
[exp]
727 / 0 AT3G17810 686 / 0.0 pyrimidine 1 (.1)
Lus10041990
[exp]
727 / 0 AT3G17810 686 / 0.0 pyrimidine 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0036 TIM_barrel PF01180 DHO_dh Dihydroorotate dehydrogenase
Representative CDS sequence
>Potri.015G030600.1 pacid=42776483 polypeptide=Potri.015G030600.1.p locus=Potri.015G030600 ID=Potri.015G030600.1.v4.1 annot-version=v4.1
ATGGCTTCTTTGAGTTTGACCCAGATCAGGGGGAGCAATTCTGTTACTGAGTTTACTCGGCTCCGTTTGAAAACTCAACGTGGCAGGAGTAAAATCGGGT
TCTTGAAGGTGGTGGGTTCTCAAGGACAGAATCAGGGAGAGCCTGATTTGAGTGTCACTGTAAATGGGTTACATATGCCTAACCCGTTTGTTATTGGGTC
TGGTCCACCTGGTACCAATTATACTGTCATGAAAAGGGCTTTTGATGAAGGCTGGGGTGCTGTCATTGCTAAAACTGTGTCACTAGATGCAGCGAAAGTT
ATAAATGTAACTCCTCGATATGCTAGGCTACGAGCTGGTGCAAATGGCTCGGCCAAGGGGCAAATTATTGGTTGGGAGAATATAGAACTCATAAGTGACC
GGCCTCTTGAAACAATGTTGAAAGAATTTAAGCAATTAAAAGAAGAATATCCTGATAGGATTCTCATTGCTTCAATCATGGAGGAGTATAACAAAGCTGC
ATGGGAGGAACTTATTGACCGAGTAGAGCAAACTGGAATTGATGCTTTAGAAATCAACTTCTCATGTCCTCATGGTATGCCTGAGCGTAAAATGGGTGCT
GCAGTTGGCCAAGATTGTGCATTGTTGGAAGAGGTTTGTGGCTGGATTAATGCAAAAGCTACTGTCCCAGTATGGGCAAAGATGACTCCTAACATCACCG
ACATAACACAGCCTGCTAGGGTGTCACTAAAATCAGGATGCGAGGGAGTGGCTGCTATTAACACCATCATGAGTGTAATGGGAATAAATCTGAAAACTTT
ACGGCCAGAGCCTTGCGTCGAAGGATATTCAACTCCTGGGGGTTACTCTTCCAAAGCAGTCCACCCTATTGCACTTGGGAAAGTAATGAGTATTGCCAAA
ATGATGAAATCAGAATTTGATTTGGAGCAATACTCACTTTCTGGTATTGGAGGTGTTGAGACAGGCAGTGATGCTGCTGAATTTATTCTTGTTGGAGCAA
ATACAGTTCAGGTATGCACTGGAGTTATGATGCATGGATATGGTCTTGTGAAGAAACTCTGCGATGAGCTGAAGGATTTTATGAAAATGCATAACTTCTC
ATCAATAGAAGATTTCAGAGGAGCATCTCTCGAGTATTTCACAACGCACATGGATTTGGTGCGCCGGCAACAAGAAGCGATACAACAGAGGAAAGCTATC
AAGAAAGGTTTGCAGTCTGACAAAGATTGGACCGGGGATGGTTTTGTGAAAGAGACCGAGAGCATGGTTTCTAACTAA
AA sequence
>Potri.015G030600.1 pacid=42776483 polypeptide=Potri.015G030600.1.p locus=Potri.015G030600 ID=Potri.015G030600.1.v4.1 annot-version=v4.1
MASLSLTQIRGSNSVTEFTRLRLKTQRGRSKIGFLKVVGSQGQNQGEPDLSVTVNGLHMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDAAKV
INVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKEEYPDRILIASIMEEYNKAAWEELIDRVEQTGIDALEINFSCPHGMPERKMGA
AVGQDCALLEEVCGWINAKATVPVWAKMTPNITDITQPARVSLKSGCEGVAAINTIMSVMGINLKTLRPEPCVEGYSTPGGYSSKAVHPIALGKVMSIAK
MMKSEFDLEQYSLSGIGGVETGSDAAEFILVGANTVQVCTGVMMHGYGLVKKLCDELKDFMKMHNFSSIEDFRGASLEYFTTHMDLVRRQQEAIQQRKAI
KKGLQSDKDWTGDGFVKETESMVSN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G17810 PYD1 pyrimidine 1 (.1) Potri.015G030600
[exp]
0 1
AT3G07040 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRI... Potri.001G134425
[exp]
3.87 0.9461
AT1G55090 carbon-nitrogen hydrolase fami... Potri.003G143700
[exp]
4.00 0.9440
AT3G49200 O-acyltransferase (WSD1-like) ... Potri.001G304600
[exp]
5.29 0.9290
AT3G07040 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRI... Potri.001G134500
[exp]
13.52 0.9421
AT1G22370 ATUGT85A5 UDP-glucosyl transferase 85A5 ... Potri.004G172700
[exp]
16.49 0.9131
AT4G05530 SDRA, IBR1 SHORT-CHAIN DEHYDROGENASE/REDU... Potri.011G022500
[exp]
16.79 0.8583
AT5G13800 CRN1, PPH Co-regulated with NYE1, pheoph... Potri.009G054800
[exp]
18.70 0.9073
AT1G02305 Cysteine proteinases superfami... Potri.002G184201
[exp]
18.97 0.9120
AT1G29740 Leucine-rich repeat transmembr... Potri.011G072666
[exp]
19.62 0.8881
AT1G76520 Auxin efflux carrier family pr... Potri.001G456400
[exp]
20.71 0.9117

Potri.015G030600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.