Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31930 961 / 0 XLG3 extra-large GTP-binding protein 3 (.1.2.3) AT2G23460 713 / 0 ATXLG1, XLG1 extra-large G-protein 1 (.1) AT4G34390 568 / 0 XLG2 extra-large GTP-binding protein 2 (.1) AT2G26300 172 / 8e-47 ATGPA1, GPALPHA1, GPA1 ,GP ALPHA 1 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) AT2G46380 48 / 4e-05 Protein of unknown function (DUF3133) (.1) AT4G01090 43 / 0.0008 Protein of unknown function (DUF3133) (.1) AT1G01440 43 / 0.0009 Protein of unknown function (DUF3133) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G042500 [exp] 1387 / 0 AT1G31930 967 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.001G135300 [exp] 1053 / 0 AT1G31930 1191 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.003G098200 [exp] 1049 / 0 AT1G31930 1123 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.007G035200 [exp] 735 / 0 AT2G23460 1146 / 0.0 extra-large G-protein 1 (.1) Potri.005G131200 [exp] 724 / 0 AT2G23460 1083 / 0.0 extra-large G-protein 1 (.1) Potri.004G148300 [exp] 635 / 0 AT2G23460 773 / 0.0 extra-large G-protein 1 (.1) Potri.009G109400 [exp] 628 / 0 AT2G23460 807 / 0.0 extra-large G-protein 1 (.1) Potri.006G219500 [exp] 173 / 4e-47 AT2G26300 645 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Potri.018G048600 [exp] 157 / 2e-41 AT2G26300 659 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012124 [exp] 998 / 0 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10010421 [exp] 994 / 0 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10019655 [exp] 744 / 0 AT2G23460 1149 / 0.0 extra-large G-protein 1 (.1) Lus10000743 [exp] 693 / 0 AT2G23460 975 / 0.0 extra-large G-protein 1 (.1) Lus10023838 [exp] 647 / 0 AT2G23460 836 / 0.0 extra-large G-protein 1 (.1) Lus10021012 [exp] 641 / 0 AT2G23460 769 / 0.0 extra-large G-protein 1 (.1) Lus10004784 [exp] 159 / 5e-42 AT2G26300 665 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Lus10003115 [exp] 159 / 9e-42 AT2G26300 663 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Lus10009897 [exp] 54 / 2e-07 AT4G34390 52 / 3e-07 extra-large GTP-binding protein 2 (.1) Lus10024210 [exp] 49 / 1e-05 AT1G31930 52 / 2e-07 extra-large GTP-binding protein 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00503 [poplar] [flax] G-alpha G-protein alpha subunit
Representative CDS sequence Show only first row Show all	>Potri.015G031100.1 pacid=42775890 polypeptide=Potri.015G031100.1.p locus=Potri.015G031100 ID=Potri.015G031100.1.v4.1 annot-version=v4.1 ATGGAAACGACGATAGAACCAGAAGGAGGGGAAGAAAACGCGTGGGAAGAAGTAATACGGAGGATGTTACCAGCAGGAGCACCATTACCAGACGAAGATC ATCTCGATTACTCAATCGCCATCGAATACGAAGGCCCTCCAGTTTCTTACGAAGTCCCTCGCGTCGATCCGTTAAATCTCAATTCATTATCGATTCGTAC TTCCTCTCTCGCTTCCACTGAAGAATCGAAATCAAGACCAAGCATTCCTGTCGCCTCTCCAGTTTCAAGATTCACCAGATTTAGCAACCACAACGGAAAC GCTAGAAGATTTTATCCTGCGAGAGTAGAAGTAGAGGAAGGAAATTATGAAGAGGAAAATGATAGGACGAGTGAAGGAGGAAGGCGAGGGAATGTTGTTA CGTTTAATACGCCGAAAGATTCGGAGACTGAGGAAGGAGAAGATGAGGAGGATGGCTATTCATCCACGCAATCTGATTTGACAACGACAAGGAGGGAAGA GAGTAAAGGAGTGAAGAGGAAGGGTGGAGTTTGTAGTAGGTGTGGTAAGAAGAATAGATTGAAGGAGAGGGAAACGTGTTTGGCTTGTGAGAAGAGGTAT TGTAGCAATTGTTTGTTGAAAGCCATGGGATCAATGCCAGAAGGGAGGAAATGTGTGAGTTGTATTGGAAAACCAATTGAGGAATCGAAGAGGTCGAGTT TAGGCAAATGTTCGAGGATTTTGGCGAGGGTTTGTAGTCCTTTGGAGGTTAGGCAGATAATGAAGGCGGAGAAGGAGTGTGCTGCTAATCAGTTGAGGCC GGAGCAGTTGATTGTGAATGGGAGGCAGTTGAGACAAGAGGAATTGGCTGAGGTTTTGGGGTGTGCGTTGCCGCCGCAGAAGTTGAAACCTGGAAAGTAT TGGTATGATAAGGATTCGGGGCTTTGGGGGAAGGAGGGAGAGAAACCGGATAGGACTATCAGTTCCAAGTTGAATGTTGGTGGTAAGCTTCGGCCGGATG CTAGTAATGGAAATACGAAGGTTTATATTAATGGCCGTGAAATTACCACGATTGAGCTCAGAGTGTTGAAGCTTGCAAACGTACAGTGCCCAAGGGATAC TCATTTCTGGGTGTATGATGATGGATCTTATGAGGAAGAAGGCCAGAATAACATAAAGGGAAACATATGGGGAAAGGCATCTACTCGATTCATCTGTTCA ATATTTTCATTGCCTGTGCCACCTGGAAATCCTAACAGGCCAAAAGAAGATCCAACTACATTTTCAGGAAGGTCTATGCCTGAGTATTTGGAACAAGGAA GGATCCAGAAACTTCTGTTATTTGGGCTGGAAGGATCTGGAACGAGTACCATTTTCAAGCAGGGCAAGTTCTTATATGGGAATAAGTTCACTCCTAAAGA GTTGCAGGACATCAAACTCATGATTCAAAGCAATATGTACAGATATCTTAGCATATTGCTTGAAGGACGAGAGAGGTTTGAAGAGGAGGCTTTGTTGGAG AAGAGTACTGCTACAATCAATTCTGAAGAATGCGCTTCAGGTAAAAGAGAAGTAGAACCAGGAGAGAACTGCATCTACTCGATTAATCAACGCTTCAAGC ATTTTTCTGACTGGTTACTGGATATCATGGCTACGGGAGACTTGGATGCATTTTTTCCTGCTGCAACACGTGAGTATGCTCCTATTGTGGATGAGATCTG GAAGGACCATGCTATTCAGGAAACGTACAAGAGAAGGGAGGAATTGCATCATCTTCTCGATGTTGCCAAATATTTCTTAGACAGGGCCATTGAGATATCG AGCAACGAGTACGAACCTACAGAGAAGGACATTTTATATGCTGAAGGAGTCACACAGAATAACAGTCTTGCATTTATGGATTTTTCATTTGATGATAGAA GCCCTATGTCTGAGATATACAATGAAAACATTGACCATCCACCTCCCTTGACCAAGTACCAACTAATTCGCATAAATTCAAAGGGATTGCGTGATGGTTG CAAGTGGCTGGAAATGTTTGAAGATGTGAGGGCAATTATCTTCTGTGTTGCATTAAGCGACTACGACCAGATGTGGGCCCATGGTGCAGGTCCTCTTTGT AACAAAATGATTGCTAGCAGAGACATGTTTGAGAGCCTGGTTGGGCATCCTTGTTTCAGGGACACCCCTTTTGTGCTCTTGCTAAACAAGTATGATGCAT TCGAGGACAAGATCAGCCAGGTCCCTCTGTCAACCTGTGAGTGGTTTGAGGACTTCAGCCCTTTGAGGCCCCATCTTAAGAGCCAATCCCTGGCTCAGCA AGCTTACTATTATGTGGCAGTGAAATTCAAGGAGTTATATTCTTCAATTAGTGGCCAAAAGTTGTTTGTAACGCAGACCAGAGCTAGGGAACGTGCTTCA GTTGACGAAGCATTCAAGTACATAAGGGAGGTCCTCAAATGGGATGAAGAAAAGAATGATAACATGTATGGAATCACTGGGGATGACTCGTTTTATAGCA CGGAAATGAGCTCTTCTCCATTTATCAGACAGGAATAA
AA sequence Show only first row Show all	>Potri.015G031100.1 pacid=42775890 polypeptide=Potri.015G031100.1.p locus=Potri.015G031100 ID=Potri.015G031100.1.v4.1 annot-version=v4.1 METTIEPEGGEENAWEEVIRRMLPAGAPLPDEDHLDYSIAIEYEGPPVSYEVPRVDPLNLNSLSIRTSSLASTEESKSRPSIPVASPVSRFTRFSNHNGN ARRFYPARVEVEEGNYEEENDRTSEGGRRGNVVTFNTPKDSETEEGEDEEDGYSSTQSDLTTTRREESKGVKRKGGVCSRCGKKNRLKERETCLACEKRY CSNCLLKAMGSMPEGRKCVSCIGKPIEESKRSSLGKCSRILARVCSPLEVRQIMKAEKECAANQLRPEQLIVNGRQLRQEELAEVLGCALPPQKLKPGKY WYDKDSGLWGKEGEKPDRTISSKLNVGGKLRPDASNGNTKVYINGREITTIELRVLKLANVQCPRDTHFWVYDDGSYEEEGQNNIKGNIWGKASTRFICS IFSLPVPPGNPNRPKEDPTTFSGRSMPEYLEQGRIQKLLLFGLEGSGTSTIFKQGKFLYGNKFTPKELQDIKLMIQSNMYRYLSILLEGRERFEEEALLE KSTATINSEECASGKREVEPGENCIYSINQRFKHFSDWLLDIMATGDLDAFFPAATREYAPIVDEIWKDHAIQETYKRREELHHLLDVAKYFLDRAIEIS SNEYEPTEKDILYAEGVTQNNSLAFMDFSFDDRSPMSEIYNENIDHPPPLTKYQLIRINSKGLRDGCKWLEMFEDVRAIIFCVALSDYDQMWAHGAGPLC NKMIASRDMFESLVGHPCFRDTPFVLLLNKYDAFEDKISQVPLSTCEWFEDFSPLRPHLKSQSLAQQAYYYVAVKFKELYSSISGQKLFVTQTRARERAS VDEAFKYIREVLKWDEEKNDNMYGITGDDSFYSTEMSSSPFIRQE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.015G031100 [exp]	0	1
AT5G12400			DNA binding;zinc ion binding;D...		Potri.001G254300 [exp]	5.47	0.8289
AT3G58110			unknown protein		Potri.013G119700 [exp]	13.41	0.8053
AT2G16485			nucleic acid binding;zinc ion ...		Potri.004G161700 [exp]	13.96	0.8077
AT2G33835	C3HZnF	FES1	FRIGIDA-ESSENTIAL 1, Zinc fing...		Potri.011G056600 [exp]	15.49	0.7671
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Potri.008G182500 [exp]	15.87	0.7778
AT5G64360		EIP9	EMF1-Interacting Protein 1, Ch...		Potri.017G044600 [exp]	16.43	0.7844
AT3G51650			unknown protein		Potri.016G133700 [exp]	16.61	0.7962
AT5G27230			Frigida-like protein (.1)		Potri.005G044000 [exp]	17.66	0.7892
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Potri.017G111400 [exp]	18.43	0.8069
AT1G13220		CRWN2, LINC2	LITTLE NUCLEI2, CROWDED NUCLEI...		Potri.008G114800 [exp]	19.20	0.7858

Compare expression of checked genes

Potri.015G031100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.