Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48450 490 / 6e-173 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2), Protein of unknown function (DUF760) (.3) AT3G17800 475 / 5e-167 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2) AT1G32160 317 / 3e-105 Protein of unknown function (DUF760) (.1) AT3G07310 187 / 2e-55 Protein of unknown function (DUF760) (.1) AT5G48590 171 / 2e-49 Protein of unknown function (DUF760) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G042400 [exp] 639 / 0 AT1G48450 477 / 5e-168 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2), Protein of unknown function (DUF760) (.3) Potri.003G097400 [exp] 377 / 1e-128 AT1G32160 488 / 3e-172 Protein of unknown function (DUF760) (.1) Potri.002G247700 [exp] 201 / 2e-60 AT3G07310 380 / 9e-131 Protein of unknown function (DUF760) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017989 [exp] 511 / 0 AT3G17800 486 / 5e-171 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2) Lus10041984 [exp] 504 / 2e-178 AT3G17800 494 / 3e-174 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2) Lus10035392 [exp] 355 / 4e-120 AT1G32160 433 / 6e-151 Protein of unknown function (DUF760) (.1) Lus10030993 [exp] 308 / 1e-101 AT1G32160 390 / 4e-134 Protein of unknown function (DUF760) (.1) Lus10000084 [exp] 233 / 1e-74 AT1G32160 304 / 5e-103 Protein of unknown function (DUF760) (.1) Lus10025896 [exp] 196 / 3e-58 AT3G07310 423 / 1e-147 Protein of unknown function (DUF760) (.1) Lus10038208 [exp] 194 / 1e-57 AT3G07310 407 / 3e-141 Protein of unknown function (DUF760) (.1) Lus10002342 [exp] 171 / 3e-49 AT3G07310 332 / 2e-112 Protein of unknown function (DUF760) (.1) Lus10002343 [exp] 170 / 9e-49 AT3G07310 348 / 8e-119 Protein of unknown function (DUF760) (.1) Lus10003162 [exp] 159 / 9e-45 AT3G07310 340 / 1e-115 Protein of unknown function (DUF760) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05542 [poplar] [flax] DUF760 Protein of unknown function (DUF760)
Representative CDS sequence Show only first row Show all	>Potri.015G031200.3 pacid=42775516 polypeptide=Potri.015G031200.3.p locus=Potri.015G031200 ID=Potri.015G031200.3.v4.1 annot-version=v4.1 ATGGAAGCAGCTACAGCTACTGTTATTGGATCTTCAATTGGGATCTCTACACCTGCAAAATCTGTTGCTAGATTGGGTTTTTTAGCTACCAATAAACAAG ATTTTGTTCATTTTCCTATTAAGCGTCATTCTTCAGTTTCGTACTCAAAGCTGGGTCATAGGAGAGTGGCATATGGAAGTAGGAGATGTATGGCAGTGAG AGCATCTTCGTCATCATCTTCAGATTCTTCAGGGTCGATTGTGCCAATTGCTCCGCTTCAGCTTGAGTCTCCGATAGGGCAGTTCTTATCCCAGATTTTG GTTAGCCACCCTCATCTTGTGCCAGCAGCAGTTGAGCAGCAGCTTGAGCAACTTCAAACTGATCGTGATTCTGAGAAGCAGAAGGAAGATCCTTCTGCTA CTGGCACCGACTTGGTATTGTATAGGAGAATTGCTGAGGCGAAGGCTAATGACAGGAGAAAAGCCCTGGAAGAGATTTTGTATGCATTGGTTGTGCAGAA GTTCATGGATGCCAATGTTTCTCTGATACCCACCATAGGCCCCTCTTCCGCAGAGTCATCTGGTCAGGTGGACACTTGGCCTAGCCAAGATGAGAAGCTT GAACAACTTCACTCGCCTGAAGCATATGAAATGATTCAGAACCATCTAACTCTCATTTTAGGAAATCGGGTGGGTGATTCAACTGCTGTTGCACAGATAA GCAAACTCAGGATTGGACAGGTCTATGCAGCATCCGTGATGTATGGATACTTCCTAAAGCGAGTTGATCAAAGGTTTCAGCTTGAGAAGACAATGAAAAT CCTGCCAAATGGTGTGGATGAGACAGAGAGTGATATTCACAAAGCTGTGGGTCAGGATGTGAAACCTGGTGGTCGAGGGTTATCCTATCAAGCTCTGTCT TCCCATCCTGAAGCCATTTCTGGTGGTATCAGTCCTGGAGGATTTGGACATGGATTAAAGGCTTCACGATTGCGAAATTATGTGATGTCTTTTGATGCGG AGACACTTCAAAGGTATGCGACAATAAGATCAAAAGAGGCTGTTAGCATCATTGAGAAGCACACTGAGGCCTTGTTTGGAAGACCTGAGATTGTCATAAC GCCTCAAGGGACCATTGATACTTCCAAGGATGAAGTAGTTACGATCAGCTTAGGTGGTTTGAAGAGACTTGCTTTGGAAGCTGTTACTTTTGGTTCTTTC CTCTGGGATGTAGAGAGTTATGTGGATTCGAGGTATCACTTTGTTCTCAATTAA
AA sequence Show only first row Show all	>Potri.015G031200.3 pacid=42775516 polypeptide=Potri.015G031200.3.p locus=Potri.015G031200 ID=Potri.015G031200.3.v4.1 annot-version=v4.1 MEAATATVIGSSIGISTPAKSVARLGFLATNKQDFVHFPIKRHSSVSYSKLGHRRVAYGSRRCMAVRASSSSSSDSSGSIVPIAPLQLESPIGQFLSQIL VSHPHLVPAAVEQQLEQLQTDRDSEKQKEDPSATGTDLVLYRRIAEAKANDRRKALEEILYALVVQKFMDANVSLIPTIGPSSAESSGQVDTWPSQDEKL EQLHSPEAYEMIQNHLTLILGNRVGDSTAVAQISKLRIGQVYAASVMYGYFLKRVDQRFQLEKTMKILPNGVDETESDIHKAVGQDVKPGGRGLSYQALS SHPEAISGGISPGGFGHGLKASRLRNYVMSFDAETLQRYATIRSKEAVSIIEKHTEALFGRPEIVITPQGTIDTSKDEVVTISLGGLKRLALEAVTFGSF LWDVESYVDSRYHFVLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48450			Protein of unknown function (D...		Potri.015G031200 [exp]	0	1
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Potri.001G093300 [exp]	1.00	0.9792
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.017G032733 [exp]	3.87	0.9572
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Potri.007G079600 [exp]	4.24	0.9597
AT1G79510			Uncharacterized conserved prot...		Potri.010G173000 [exp]	4.47	0.9548
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Potri.007G043600 [exp]	6.00	0.9566
AT5G60750			CAAX amino terminal protease f...		Potri.003G133800 [exp]	8.24	0.9276
AT4G02340			alpha/beta-Hydrolases superfam...		Potri.002G202700 [exp]	9.38	0.9496
AT1G64970		VTE4, TMT1, G-T...	VITAMIN E DEFICIENT 4, gamma-t...		Potri.013G077000 [exp]	9.79	0.9516
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.017G032700 [exp]	11.22	0.9479
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Potri.001G258100 [exp]	12.00	0.9444

Compare expression of checked genes

Potri.015G031200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.