Plant FIBer expression Database

Potri.015G031300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G14700 444 / 5e-157 PAP3, ATPAP3 purple acid phosphatase 3 (.1.2)
AT2G01890 434 / 2e-153 PAP8, ATPAP8 purple acid phosphatase 8 (.1.2)
AT3G17790 422 / 7e-149 ATACP5, ATPAP17, PAP17 purple acid phosphatase 17 (.1)
AT1G25230 408 / 4e-143 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
AT2G01880 385 / 3e-134 PAP7, ATPAP7 purple acid phosphatase 7 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G139100
[exp]
449 / 2e-159 AT1G14700 476 / 2e-169 purple acid phosphatase 3 (.1.2)
Potri.012G042200
[exp]
439 / 1e-155 AT3G17790 437 / 7e-155 purple acid phosphatase 17 (.1)
Potri.010G101900
[exp]
432 / 5e-153 AT3G17790 443 / 6e-157 purple acid phosphatase 17 (.1)
Potri.015G031400
[exp]
432 / 1e-152 AT3G17790 473 / 1e-168 purple acid phosphatase 17 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031941
[exp]
422 / 6e-149 AT1G14700 426 / 2e-150 purple acid phosphatase 3 (.1.2)
Lus10035100
[exp]
417 / 1e-144 AT1G14700 419 / 7e-145 purple acid phosphatase 3 (.1.2)
Lus10019133
[exp]
396 / 5e-139 AT2G01890 417 / 5e-147 purple acid phosphatase 8 (.1.2)
Lus10034429
[exp]
387 / 1e-135 AT1G14700 416 / 2e-146 purple acid phosphatase 3 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0163 Calcineurin PF00149 Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence
>Potri.015G031300.1 pacid=42775039 polypeptide=Potri.015G031300.1.p locus=Potri.015G031300 ID=Potri.015G031300.1.v4.1 annot-version=v4.1
ATGGCTAGTTTCAGTCACCATTTCAGTTCAATGCACGTCGTATGGATGGCCTGCTTCCATGTGTATGTTCTTTGTGCCTTAGCTGAGCTTCAGCGTTTCG
AGCAACCTACGAAGGAGGATGGCTCAATTAGCTTTTTGGTGGTTGGAGACTGGGGAAGAAAAGGAAATTATAATCAATCCAATGTTGCATTTCAGATGGG
AAGAATAGGAGAAGAGTTGAGCATTGATTTCGTTGTTTCTACTGGAGACAACTTTTACGAGGACGGGTTGAGAAGCATAAATGACCCTGTGTTTGAGAAA
TCATTTAGCAAAATCTATACTGCAAAGAGCCTTCAAAAGCAGTGGTACAGTGTTTTAGGCAACCATGACTACCGGGGAAATGTCAAGGCTCAATTAAGTC
CGAACCTGAGGAATGTAGATAGCCGATGGATTTGCCTGAGATCTTTCATTCTTAACGCAGAAATTGTGGAATTGTTCTTCATCGACACCACTCCATTTGT
GGACAAGTACTTTCTGAAGCCAAAGCACCATCATTATGATTGGAGAGGAGTGATGCCAAGGCAGCACTATCTTTCAAACCTCTTGAAGGACTTGGAATCA
GCTTTGCAGGACTCCACTGCTAACTGGAAGATTGTAGTTGGGCATCATACTATCAGAAGCATTGGCCATCATGGGGAAACAAATGAGCTAAAGAAGCAAC
TTCTCCCGCTTCTTGAGGCAAACAATGTTGAAATGTACATAAATGGGCATGATCATTGCTTGGAACACATAACCAGCAGCACAAGCCAAATCCAATTTTT
AACAAGTGGAGGTGGATCGAAGGCATGGAAAGGGGATATTGATCAACTAAACATAGGAGGAGTCAAGTTTTATTATGATGGGCAAGGTTTCATGTCCCTG
GAACTAAGGCAGACACATGTAAAGATAGTATTCTATGACGTTTTTGGCAAAGTTCTGTACAATTTGAACATGTTTAAGCAGCTCAACCCTGTCATCTAG
AA sequence
>Potri.015G031300.1 pacid=42775039 polypeptide=Potri.015G031300.1.p locus=Potri.015G031300 ID=Potri.015G031300.1.v4.1 annot-version=v4.1
MASFSHHFSSMHVVWMACFHVYVLCALAELQRFEQPTKEDGSISFLVVGDWGRKGNYNQSNVAFQMGRIGEELSIDFVVSTGDNFYEDGLRSINDPVFEK
SFSKIYTAKSLQKQWYSVLGNHDYRGNVKAQLSPNLRNVDSRWICLRSFILNAEIVELFFIDTTPFVDKYFLKPKHHHYDWRGVMPRQHYLSNLLKDLES
ALQDSTANWKIVVGHHTIRSIGHHGETNELKKQLLPLLEANNVEMYINGHDHCLEHITSSTSQIQFLTSGGGSKAWKGDIDQLNIGGVKFYYDGQGFMSL
ELRQTHVKIVFYDVFGKVLYNLNMFKQLNPVI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G14700 PAP3, ATPAP3 purple acid phosphatase 3 (.1.... Potri.015G031300
[exp]
0 1
AT2G27830 unknown protein Potri.003G116300
[exp]
7.74 0.7863
AT1G11910 ATAPA1, APA1 aspartic proteinase A1 (.1) Potri.013G002200
[exp]
21.90 0.7838 SOYAP2.2
AT2G25737 Sulfite exporter TauE/SafE fam... Potri.005G124200
[exp]
32.46 0.7684
AT3G15030 TCP TCP4, MEE35 maternal effect embryo arrest ... Potri.011G096600
[exp]
35.77 0.7649 Pt-TCP1.1
AT4G16447 unknown protein Potri.016G009200
[exp]
50.86 0.7820
AT2G20740 Tetraspanin family protein (.1... Potri.004G041500
[exp]
52.24 0.7382
AT5G54490 PBP1 pinoid-binding protein 1 (.1) Potri.001G414600
[exp]
59.01 0.7627
AT5G67030 NPQ2, LOS6, IBS... NON-PHOTOCHEMICAL QUENCHING 2,... Potri.005G138400
[exp]
91.64 0.7675 Pt-ZEAEPOX.2
AT5G11720 Glycosyl hydrolases family 31 ... Potri.011G154500
[exp]
101.85 0.7193
AT3G49190 O-acyltransferase (WSD1-like) ... Potri.017G010300
[exp]
126.55 0.7344

Potri.015G031300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.