Plant FIBer expression Database

Potri.015G031400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G17790 473 / 1e-168 ATACP5, ATPAP17, PAP17 purple acid phosphatase 17 (.1)
AT1G14700 423 / 8e-149 PAP3, ATPAP3 purple acid phosphatase 3 (.1.2)
AT1G25230 416 / 1e-146 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
AT2G01890 416 / 2e-146 PAP8, ATPAP8 purple acid phosphatase 8 (.1.2)
AT2G01880 380 / 2e-132 PAP7, ATPAP7 purple acid phosphatase 7 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G042200
[exp]
619 / 0 AT3G17790 437 / 7e-155 purple acid phosphatase 17 (.1)
Potri.010G101900
[exp]
466 / 2e-166 AT3G17790 443 / 6e-157 purple acid phosphatase 17 (.1)
Potri.008G139100
[exp]
458 / 1e-162 AT1G14700 476 / 2e-169 purple acid phosphatase 3 (.1.2)
Potri.015G031300
[exp]
432 / 5e-153 AT1G14700 444 / 5e-157 purple acid phosphatase 3 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031941
[exp]
437 / 8e-155 AT1G14700 426 / 2e-150 purple acid phosphatase 3 (.1.2)
Lus10035100
[exp]
415 / 1e-143 AT1G14700 419 / 7e-145 purple acid phosphatase 3 (.1.2)
Lus10019133
[exp]
376 / 7e-131 AT2G01890 417 / 5e-147 purple acid phosphatase 8 (.1.2)
Lus10034429
[exp]
367 / 8e-128 AT1G14700 416 / 2e-146 purple acid phosphatase 3 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0163 Calcineurin PF00149 Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence
>Potri.015G031400.1 pacid=42775859 polypeptide=Potri.015G031400.1.p locus=Potri.015G031400 ID=Potri.015G031400.1.v4.1 annot-version=v4.1
ATGGCAGGTCTCATTCTCAATAACAAAAGCATGGCTCTATGCCTTGTTTTGGTGATATGTAGTTTTGGGTTGTGCTTAGTCTCTACACATGCAGAGCTTC
AAAGATTTGGACAGCCTGCAAAAACTGATGGGACTCTTTCCTTTTTGGTGCTTGGAGATTGGGGCAGAAAAGGTGCTTTCAACCAGTCTGAAGTTGCTGT
TCAGATGGGAAGGATTGGAGAGAAGCTGGACATAGATTTTGTAGTTTCAACAGGTGATAATTTCTATGATAATGGATTGACTGGAAACCAAGACAAAGCA
TTTGTGGAATCATTTACTCAAATCTACACTGCAAATAGCCTGCAAAAGCAGTGGTACAGTGTCTTGGGAAATCATGACTATAGGGGGAATGCAGAGGCAC
AACTGAGCCAACAACTTAGGAAAATTGATAGCAGGTGGCTATGTTTGAGATCTTTCATCGTCAATGCTGAATTGGCTGAAATTTTCTTTGTGGATACCAC
CCCTTTTGTCCAATCATACTTTACTAATGCTGAGGGCCATACTTATGACTGGAGAGGCATTGGATCTCCTAGATCTTATATTGCAAACCTAATAAAGGAT
CTAAAGTTGGCATTGAGTGAATCAAGTGCAAAGTGGAAAATTGTTGTGGGTCATCACGCAATTAGAAGCATAGGACATCATGGCGACACTGAGGAACTTG
TCAGCAAGCTTCATCCAATCCTGAAGGCCAATAATGTAGATTTTTACATGAATGGACATGACCATTGCCTTGAACACATCAGTGACACAGAGAGTCCAAT
ACAATTTCTAACTAGTGGAGCTGGGTCTAAGGCATGGAGGGGTGACATTAAAGAACAAAACAAAGATGGTCTAAAATTCTTCTACGATGGTCAAGGTTTC
ATGTCTGTGCAGTTGACTCAGAATGAAGCAGAGATTGCATTTTATGATGTTTCTGGCACTGTTTTGCATAGATGGACTACAACAAAGTTGCTCCACTCAT
CAACCTAG
AA sequence
>Potri.015G031400.1 pacid=42775859 polypeptide=Potri.015G031400.1.p locus=Potri.015G031400 ID=Potri.015G031400.1.v4.1 annot-version=v4.1
MAGLILNNKSMALCLVLVICSFGLCLVSTHAELQRFGQPAKTDGTLSFLVLGDWGRKGAFNQSEVAVQMGRIGEKLDIDFVVSTGDNFYDNGLTGNQDKA
FVESFTQIYTANSLQKQWYSVLGNHDYRGNAEAQLSQQLRKIDSRWLCLRSFIVNAELAEIFFVDTTPFVQSYFTNAEGHTYDWRGIGSPRSYIANLIKD
LKLALSESSAKWKIVVGHHAIRSIGHHGDTEELVSKLHPILKANNVDFYMNGHDHCLEHISDTESPIQFLTSGAGSKAWRGDIKEQNKDGLKFFYDGQGF
MSVQLTQNEAEIAFYDVSGTVLHRWTTTKLLHSST

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G17790 ATACP5, ATPAP17... purple acid phosphatase 17 (.1... Potri.015G031400
[exp]
0 1
AT5G54880 DTW domain-containing protein ... Potri.001G423900
[exp]
13.41 0.6984
AT1G07750 RmlC-like cupins superfamily p... Potri.001G402600
[exp]
13.41 0.6767
AT1G10630 ATARFA1F ADP-ribosylation factor A1F (.... Potri.010G152600
[exp]
16.61 0.7174 Pt-ARF1.6
AT5G50890 alpha/beta-Hydrolases superfam... Potri.005G204100
[exp]
30.19 0.6711
AT5G10990 SAUR-like auxin-responsive pro... Potri.004G164300
[exp]
36.00 0.6881
AT4G33010 ATGLDP1 glycine decarboxylase P-protei... Potri.018G053680
[exp]
40.62 0.7061
AT5G01620 TBL35 TRICHOME BIREFRINGENCE-LIKE 35... Potri.016G125600
[exp]
46.43 0.6653
AT5G59350 unknown protein Potri.009G029300
[exp]
74.49 0.6800
AT4G33010 ATGLDP1 glycine decarboxylase P-protei... Potri.018G053640
[exp]
143.03 0.6541
AT1G55270 Galactose oxidase/kelch repeat... Potri.001G008000
[exp]
148.49 0.6305

Potri.015G031400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.