Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73480 504 / 1e-177 alpha/beta-Hydrolases superfamily protein (.1) AT1G18360 460 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) AT5G11650 380 / 3e-130 alpha/beta-Hydrolases superfamily protein (.1) AT1G11090 162 / 3e-46 alpha/beta-Hydrolases superfamily protein (.1) AT2G39420 157 / 1e-44 alpha/beta-Hydrolases superfamily protein (.1) AT2G39410 151 / 4e-42 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G16120 147 / 3e-40 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G55180 144 / 2e-39 alpha/beta-Hydrolases superfamily protein (.1) AT2G39400 142 / 4e-39 alpha/beta-Hydrolases superfamily protein (.1) AT1G52760 136 / 2e-36 LysoPL2 lysophospholipase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G041800 [exp] 685 / 0 AT1G73480 510 / 3e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.018G045800 [exp] 359 / 4e-122 AT5G11650 540 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G237200 [exp] 350 / 2e-118 AT5G11650 483 / 4e-171 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G046500 [exp] 165 / 2e-47 AT1G11090 461 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G049000 [exp] 149 / 2e-41 AT2G39420 479 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G212200 [exp] 148 / 6e-41 AT2G39420 462 / 4e-165 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G114800 [exp] 149 / 8e-41 AT5G16120 520 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G124000 [exp] 144 / 1e-38 AT1G77420 510 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G059200 [exp] 138 / 4e-37 AT1G52760 560 / 0.0 lysophospholipase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009679 [exp] 545 / 0 AT1G73480 525 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10009041 [exp] 524 / 0 AT1G73480 511 / 3e-180 alpha/beta-Hydrolases superfamily protein (.1) Lus10006043 [exp] 334 / 5e-112 AT5G11650 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10000572 [exp] 332 / 3e-111 AT5G11650 529 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10011212 [exp] 148 / 4e-41 AT1G11090 430 / 2e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10040328 [exp] 147 / 1e-40 AT2G39420 468 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10041441 [exp] 146 / 1e-39 AT1G77420 496 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Lus10023448 [exp] 149 / 2e-39 AT2G39420 459 / 2e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10007877 [exp] 144 / 6e-39 AT3G62860 501 / 2e-179 alpha/beta-Hydrolases superfamily protein (.1) Lus10034331 [exp] 143 / 1e-38 AT1G77420 499 / 8e-178 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.015G031900.4 pacid=42775319 polypeptide=Potri.015G031900.4.p locus=Potri.015G031900 ID=Potri.015G031900.4.v4.1 annot-version=v4.1 ATGGCAATGGTGCAATCTCCAAAGGCGGCAACATCATCATCGCCGTCGTTAATTCTAACGTCTGGTGCTAGTGGGAGAATTCGTGCATTATTTTCCGTTC AAGCCTTAAAAAGCTTGTTAGTGCTGATAAATGCGTTCTTTTTGCTGCTTTTAGTCCCTTTCCGTGGTCGGAGACGGACGGTGGTATCGGCAGGGGTGTC TGCGAGGGGGTCATCATCATCATCTTCGTTCGGTGATCAGAAATCCAAGGATGATAGGTTGTTGCAGGAAAGTGGGGTCCACCGGACCAAGTTGCGGGTC CCGGCAACAGTAGTGCCATGGAAGAGTGCTGGCGGTAGTGGGGTGACGGCGGTGGTGGATTCGGAAGTTGGGGGCAGGAGGGCCATTGCAATAAAGAGGG CGTTACAGGAAGATGACCCCAATACGATTAGAGAGTTTTCACTGTTTGTTTCTGCTCGGAGTGATACCATTTTTACCCAGTCGTGGACCTCAGTTTCAGT TAAAATCAGGGGGCTGGTTGTTCTTATGCATGGTCTGAATGAGCACAGTGGCAGATATAGTGACTTTGCGAAAAAACTGAATGCTAATGGGTTTAAGGTT TATGGAATGGATTGGATTGGACATGGTGGAAGTGATGGGCTACATGGATATGTTCATTCTCTTGATTATGCTGTTGATGATCTGAAATCTTTTCTTGACA AGGTTTTGTCAGAAAATCCTGGGCTTCCATGTTATTGCTTTGGGCACTCAACTGGTGCAGCCATTGTTCTCAAGGCGGTGATGGATCCAAAAGTTGAAGC CCGTGTTTCTGGTGTGGTATTTACTTCACCTGCAGTAGGAATTCAGCCATCCCATCCTTTTGTTGTGCTACTAGCCCCAGTTATCTCATTTTTGTTGCCA AAGTTCCAACTTAGTACTTCAAATAAGAAGGGCATGCCAGTTTCTCGGGACCCAGAGGCACTAGTGGCCAAGTATTCGGACCCACTAGTCTACACTGGAT TTCTCAGGGTAAAGACTGGCTATGAAATTCTCCGAATTACAGCCTATTTACAGCAGAATCTGAAAAGACTGAGAGTTCCATTTCTCGTTCTTCATGGTGC TGCTGACACTGTAACCGACCCGGATGCTTCTCGCAAACTGTACGAAGAAGCCTCCTCAACAGACAAAACCATCAAACTATTAGAAGGGTTCTTGCATGAT CTCCTATTTGAACCAGAACGGGATGAAATCATGAAGGACATTATTGATTGGTTGAATTGTAGAGTATAA
AA sequence Show only first row Show all	>Potri.015G031900.4 pacid=42775319 polypeptide=Potri.015G031900.4.p locus=Potri.015G031900 ID=Potri.015G031900.4.v4.1 annot-version=v4.1 MAMVQSPKAATSSSPSLILTSGASGRIRALFSVQALKSLLVLINAFFLLLLVPFRGRRRTVVSAGVSARGSSSSSSFGDQKSKDDRLLQESGVHRTKLRV PATVVPWKSAGGSGVTAVVDSEVGGRRAIAIKRALQEDDPNTIREFSLFVSARSDTIFTQSWTSVSVKIRGLVVLMHGLNEHSGRYSDFAKKLNANGFKV YGMDWIGHGGSDGLHGYVHSLDYAVDDLKSFLDKVLSENPGLPCYCFGHSTGAAIVLKAVMDPKVEARVSGVVFTSPAVGIQPSHPFVVLLAPVISFLLP KFQLSTSNKKGMPVSRDPEALVAKYSDPLVYTGFLRVKTGYEILRITAYLQQNLKRLRVPFLVLHGAADTVTDPDASRKLYEEASSTDKTIKLLEGFLHD LLFEPERDEIMKDIIDWLNCRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73480			alpha/beta-Hydrolases superfam...		Potri.015G031900 [exp]	0	1
AT2G35910			RING/U-box superfamily protein...		Potri.008G018900 [exp]	1.41	0.8940
					Potri.002G056750 [exp]	6.00	0.8292
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.007G074466 [exp]	16.43	0.8905
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Potri.003G079200 [exp]	42.28	0.7054	ACX1.1
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Potri.017G110700 [exp]	49.81	0.7487
AT5G66760		SDH1-1	succinate dehydrogenase 1-1 (....		Potri.007G026400 [exp]	64.34	0.7250	Pt-SDH1.1

Compare expression of checked genes

Potri.015G031900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.