Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	TPS1.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23960 444 / 8e-151 ATTPS21 terpene synthase 21 (.1.2) AT1G70080 384 / 2e-126 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14490 380 / 3e-125 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14540 369 / 8e-121 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G29410 360 / 1e-117 AtTPS25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14520 357 / 2e-116 AtTPS18 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G31950 355 / 2e-115 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G33750 347 / 2e-112 AtTPS22 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G48800 336 / 4e-108 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G32030 333 / 6e-107 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G085500 [exp] 1085 / 0 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.011G142800 [exp] 607 / 0 AT5G23960 405 / 2e-135 terpene synthase 21 (.1.2) Potri.005G095500 [exp] 560 / 0 AT5G23960 408 / 6e-137 terpene synthase 21 (.1.2) Potri.019G020367 [exp] 496 / 2e-171 AT5G23960 494 / 7e-171 terpene synthase 21 (.1.2) Potri.019G045100 [exp] 489 / 3e-168 AT5G23960 474 / 2e-162 terpene synthase 21 (.1.2) Potri.019G016500 [exp] 484 / 7e-167 AT5G23960 463 / 6e-159 terpene synthase 21 (.1.2) Potri.019G023004 [exp] 484 / 1e-166 AT5G23960 474 / 8e-163 terpene synthase 21 (.1.2) Potri.019G016900 [exp] 479 / 2e-164 AT5G23960 474 / 6e-163 terpene synthase 21 (.1.2) Potri.019G016700 [exp] 478 / 3e-164 AT5G23960 482 / 6e-166 terpene synthase 21 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031590 [exp] 488 / 3e-168 AT5G23960 378 / 3e-125 terpene synthase 21 (.1.2) Lus10008611 [exp] 467 / 2e-159 AT5G23960 348 / 4e-113 terpene synthase 21 (.1.2) Lus10042204 [exp] 460 / 5e-157 AT5G23960 347 / 4e-113 terpene synthase 21 (.1.2) Lus10040043 [exp] 430 / 6e-145 AT5G23960 329 / 7e-106 terpene synthase 21 (.1.2) Lus10002660 [exp] 423 / 1e-142 AT3G14520 310 / 4e-98 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10014724 [exp] 417 / 2e-140 AT5G23960 314 / 2e-100 terpene synthase 21 (.1.2) Lus10008614 [exp] 409 / 3e-137 AT5G23960 345 / 1e-112 terpene synthase 21 (.1.2) Lus10042202 [exp] 399 / 4e-133 AT5G23960 302 / 8e-96 terpene synthase 21 (.1.2) Lus10031589 [exp] 382 / 8e-126 AT5G23960 318 / 3e-101 terpene synthase 21 (.1.2) Lus10039713 [exp] 328 / 1e-104 AT4G16740 409 / 4e-136 terpene synthase 03 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [poplar] [flax] Terpene_synth Terpene synthase, N-terminal domain CL0613 [poplar] [flax] Terp_synthase PF03936 [poplar] [flax] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Potri.015G032100.3 pacid=42775575 polypeptide=Potri.015G032100.3.p locus=Potri.015G032100 ID=Potri.015G032100.3.v4.1 annot-version=v4.1 ATGTCTACCCAAGTCTCCCAAGAAGTTGTACCCAAGGCTCCTCAAGCTCGTGATAATGAGATTATTCGCCGGACAGCCAATTATCATCCAAGCATTTGGG GTGATCAATTCATTTCCCATCTCCCCAAAGACAAGGTGCATGAAGCCATTGAATTGCAAGAAATTGAAAAGCTGAGGGAACAATTTAAGAGGGAACTCTT GGCTAGTAATTCATCACAAAAGCTCGATCTTATAGATGCAATCCAGCGCCTAGGTGTGGCTTACCACTTTGAAACAGAGATAGAAGAAGCACTACAGCAT ATCTACAATAACCGTATTGATATGGAAGATGATGACCTTTACAACACTGCTCTTGGTTTTCGACTACTAAGACAACATGGCTACAACGTTTCATGTGATA TATTCAACAAGTTCAAAGATGACAAAGGTTATTTCAAGCCATCCAATGATGTTCGAGGCATCCTAGGTCTCTATGAAGCAGCACATCTAGCGGTGCATGG AGAAGATATTCTTGATGAGGCCCTAGCTTTCACAACCATCCACCTCAAGTCCATGGAAACTAGTCCAAACTGTCCACTAACAGCAAAAGTTTCTCATGCC CTAAAGCAGCCCATCAGAAGGGGCGTTCCAAGACTGGAGAGCAGGCGCTACATTTCTTTCTATCAGGACGAGCCGTCATGTAACAAAACTTTACTAAGGC TTGCAAAGTTGAATTTCAATGTCGTGCAAGAATTACATAAAGAAGAGCTTTCAGAAATTACAAGGTGGTGGAAGGGTTTGGACTTTGCTAGAAGGCTTCC TTTTGCGAGGGACAGGGTGGTCGAGTGCTTCTTCTGGATAGTAGGTGCATATTTTGAGCCTCAGTACTCCCTCGCGAGGAAAATACTTACCAAAGTAATA GCCATGACATCGATTATTGATGACATCTATGATGTTTATGGCACCCTTGAAGAGCTGGAACTTTTCACTGAAGCAATTGACAGGTGGGACACTAAAAGCA TGGACCAGCTTCCAGACTACATGAAAATATGTTATGAGGCACTATTGAATGTTTATAGTGAAATTGAGGAAAAAGTGGCGAAGGAGGGATGGTCCTACAG AGTCCACTTTGGAAAACAAGCAATGAAAGTTCTAGTCCATGCCTACTTTGACGAAGCCAAATGGTTCCATGAAAATCATATCCCGACGATGGAAGAATAT ATGCAGGTGGCTCTAGTAACGTCTGGTTATTCCTTGCTCGCAACCGTGTCTTTCATTGGCATGGGCGACATGGTGACCGAGCAAGCATTTGACTGGGTGT TCAATCGCCCTAAAATTGTTAGAGCCTCAGAAACAATTAGCAGACTCGTAGATGATGTAAGATCACACAAGTTTGAACAAGAGAGAGGACATGCTGCCTC TGGAGTTGAATGTTACATAAGGCAATATGGTCTCTCGGAACAAGAAGTGTATAAAGAGTTTCACATGCAAGTCGTCAATGCTTGGAAGGATATTAATGAA GAGTGTCTCAAACCTACCGCTGTGCCGATGCCTCTGCTTGAACGCATTCTCAATCTTACGAGAGTCATCGATGTCATTTACAAGGAGAAAGATGAGTACA CCCATGTTGGAGAAGTAATGAAAAACAATGTTGCGTCATTGGTTATAGATTCGGTGCCTATATAA
AA sequence Show only first row Show all	>Potri.015G032100.3 pacid=42775575 polypeptide=Potri.015G032100.3.p locus=Potri.015G032100 ID=Potri.015G032100.3.v4.1 annot-version=v4.1 MSTQVSQEVVPKAPQARDNEIIRRTANYHPSIWGDQFISHLPKDKVHEAIELQEIEKLREQFKRELLASNSSQKLDLIDAIQRLGVAYHFETEIEEALQH IYNNRIDMEDDDLYNTALGFRLLRQHGYNVSCDIFNKFKDDKGYFKPSNDVRGILGLYEAAHLAVHGEDILDEALAFTTIHLKSMETSPNCPLTAKVSHA LKQPIRRGVPRLESRRYISFYQDEPSCNKTLLRLAKLNFNVVQELHKEELSEITRWWKGLDFARRLPFARDRVVECFFWIVGAYFEPQYSLARKILTKVI AMTSIIDDIYDVYGTLEELELFTEAIDRWDTKSMDQLPDYMKICYEALLNVYSEIEEKVAKEGWSYRVHFGKQAMKVLVHAYFDEAKWFHENHIPTMEEY MQVALVTSGYSLLATVSFIGMGDMVTEQAFDWVFNRPKIVRASETISRLVDDVRSHKFEQERGHAASGVECYIRQYGLSEQEVYKEFHMQVVNAWKDINE ECLKPTAVPMPLLERILNLTRVIDVIYKEKDEYTHVGEVMKNNVASLVIDSVPI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.015G032100 [exp]	0	1	TPS1.4
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Potri.013G157400 [exp]	1.73	0.9899
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125801 [exp]	2.44	0.9679
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.005G106100 [exp]	3.00	0.9835	Pt-CTS2.5
AT3G25180		CYP82G1	cytochrome P450, family 82, su...		Potri.013G125300 [exp]	3.46	0.9884	Pt-CYP82.15
AT5G10310			unknown protein		Potri.005G073700 [exp]	15.65	0.8585
					Potri.010G133401 [exp]	19.36	0.9386
AT5G57520	C2H2ZnF	ATZFP2, ZFP2	zinc finger protein 2 (.1)		Potri.006G169800 [exp]	20.24	0.8841
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Potri.010G133700 [exp]	20.29	0.9774
					Potri.001G203700 [exp]	20.63	0.9284
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Potri.012G079100 [exp]	22.27	0.9387

Compare expression of checked genes

Potri.015G032100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.