Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01900 476 / 9e-167 DNAse I-like superfamily protein (.1) AT2G37440 335 / 1e-110 DNAse I-like superfamily protein (.1.2) AT1G05470 282 / 1e-88 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT5G04980 277 / 2e-88 DNAse I-like superfamily protein (.1.2) AT5G65090 277 / 3e-88 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT2G32010 279 / 1e-87 CVL1 CVP2 like 1 (.1.2) AT3G63240 275 / 2e-86 DNAse I-like superfamily protein (.1) AT1G34120 255 / 2e-78 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3) AT4G18010 253 / 3e-77 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT1G71710 238 / 3e-71 DNAse I-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G041600 [exp] 725 / 0 AT2G01900 472 / 3e-165 DNAse I-like superfamily protein (.1) Potri.010G101700 [exp] 469 / 1e-163 AT2G01900 537 / 0.0 DNAse I-like superfamily protein (.1) Potri.008G139600 [exp] 442 / 3e-153 AT2G01900 521 / 0.0 DNAse I-like superfamily protein (.1) Potri.008G011000 [exp] 315 / 8e-103 AT5G04980 534 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.007G090200 [exp] 285 / 5e-90 AT5G65090 671 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.010G247800 [exp] 280 / 4e-89 AT5G04980 552 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.008G155700 [exp] 283 / 5e-89 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2) Potri.010G084300 [exp] 280 / 4e-88 AT2G32010 865 / 0.0 CVP2 like 1 (.1.2) Potri.005G212700 [exp] 278 / 1e-87 AT3G63240 778 / 0.0 DNAse I-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031310 [exp] 353 / 1e-119 AT2G01900 320 / 3e-107 DNAse I-like superfamily protein (.1) Lus10025305 [exp] 318 / 2e-103 AT2G37440 481 / 8e-167 DNAse I-like superfamily protein (.1.2) Lus10024427 [exp] 316 / 4e-97 AT2G37440 489 / 2e-162 DNAse I-like superfamily protein (.1.2) Lus10006597 [exp] 287 / 3e-93 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2) Lus10008934 [exp] 277 / 4e-91 AT5G04980 395 / 3e-138 DNAse I-like superfamily protein (.1.2) Lus10028884 [exp] 279 / 6e-89 AT5G04980 526 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10039352 [exp] 281 / 3e-88 AT2G32010 894 / 0.0 CVP2 like 1 (.1.2) Lus10034857 [exp] 277 / 7e-88 AT5G04980 530 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10033398 [exp] 278 / 9e-88 AT5G04980 540 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10006904 [exp] 271 / 1e-84 AT3G63240 711 / 0.0 DNAse I-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [poplar] [flax] DNase_I-like PF03372 [poplar] [flax] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Potri.015G032200.2 pacid=42776506 polypeptide=Potri.015G032200.2.p locus=Potri.015G032200 ID=Potri.015G032200.2.v4.1 annot-version=v4.1 ATGCAGACAATCAAGCAAGAAGCATACATCAATTCATTTTTGAAGGTCATGTGGCCTAAGTTTGTGGCTAACAAGTTCTTGAGGAAGATGTTGGGTAGCA ATAACATCGTTGCAGACTTTCCAAATTCAACAGAGACCATGTTAGAGCTAGAAGAAACTTCAAGTACTTCTTCAGATCAAGCCTCGCTAATCAGTTCCAG GAAATACATCACTGGTGATCAGGGAAGACACAAGATCTTTGTTGGTTCATGGAATGTTGGGGGCGTTGCACCACCTGATGATTTGAACATGGAAGATTGG TTATGCACACATACAGACCCTGCTGACATCTATGTTCTTGGATATTTCAGGTTCCAAGAAGTTGTGCCTCTCAATGCTGGAAACATTGTTCTAGGTCTCG AAAACAGCAAGATTTGTAGCAGATGGAATTCTCTTATTAGAGAAGCTCTTAACAATAGTATCTCAAAGCATGTTCAAGAAGATAAAGTGGGAGAGTTTTA CAAAGTGCACCCCTTAAAAAATCATAGCATTGCTTCTCTCGACAAAAGCAGCAATAATTTTCCACACTGCTTTGATTGTATCACAAGCAAGCAAATGGTT GGGATTTTTATCACTGTTTGGGTTAGAAATGATCTCCTTCCATACATACAACATCCTAGTGTCTCCTGTGTAGGCTGCGGCATCATGGGCTGCCTAGGAA ATAAGGGATCGGTCTCAGTTAGGTTTTGCTTGCATGAAACAAGCTTCTGTTTTGTGTGTAGTCATCTGGCTTCTGGAGGGAAGGAAGGAGATGAAAAGAA CAGAAATGCTAACGCTATAGAAATTTTGTCAAGTACAAGATTTTCTCGTGGTCCTTTGCGCAATTTGCCCCGCAAGATTCTTGATCACGATCAGGTAATT TGGCTTGGAGATTTCAACTACAGGATATACCTGCCTCACACCACAACAAGATCTCTAGTCCAGAAAAAAGAATGGAATATTTTGTTAGAAAGGGATCAGC TCAAGGCCGAGCTCATGAAGGGTCATGTATTCCAAGGTTGGCGCGAAGGAATAATTGAATTTGCACCTACATACAAGTACTATCAGAACTCACAGGTTTA CTATGGCTGTGATCAGAAGAGGAAGGGTGAAAAGAAGCGTGCTCCTGCATGGTGTGATCGAATAATTTGGTTTGGAGAGGGACTGAAGCAGAAAGAATAC AGCAGAGGTGAATTTAGATTGTCAGACCATAGACCTGTTCGCGCAATCTTCATAGCAGAAATCGAAGTCCCAAGTGATTCCAGGAGACTGGGAAGCTCCT TTACAGGCAGATTTCGCTGCTTAAAAGACCATCTTGAAGTGTGTTCTAATGAAAAGATATCATGTAATGTCGACAGAACAAGCTTCTATTCTGAATAA
AA sequence Show only first row Show all	>Potri.015G032200.2 pacid=42776506 polypeptide=Potri.015G032200.2.p locus=Potri.015G032200 ID=Potri.015G032200.2.v4.1 annot-version=v4.1 MQTIKQEAYINSFLKVMWPKFVANKFLRKMLGSNNIVADFPNSTETMLELEETSSTSSDQASLISSRKYITGDQGRHKIFVGSWNVGGVAPPDDLNMEDW LCTHTDPADIYVLGYFRFQEVVPLNAGNIVLGLENSKICSRWNSLIREALNNSISKHVQEDKVGEFYKVHPLKNHSIASLDKSSNNFPHCFDCITSKQMV GIFITVWVRNDLLPYIQHPSVSCVGCGIMGCLGNKGSVSVRFCLHETSFCFVCSHLASGGKEGDEKNRNANAIEILSSTRFSRGPLRNLPRKILDHDQVI WLGDFNYRIYLPHTTTRSLVQKKEWNILLERDQLKAELMKGHVFQGWREGIIEFAPTYKYYQNSQVYYGCDQKRKGEKKRAPAWCDRIIWFGEGLKQKEY SRGEFRLSDHRPVRAIFIAEIEVPSDSRRLGSSFTGRFRCLKDHLEVCSNEKISCNVDRTSFYSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01900			DNAse I-like superfamily prote...		Potri.015G032200 [exp]	0	1
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Potri.011G010000 [exp]	1.41	0.9954
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.002G039500 [exp]	3.16	0.9900
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Potri.006G058200 [exp]	4.47	0.9849	Pt-CYP93.2
AT1G76070			unknown protein		Potri.005G107500 [exp]	4.47	0.9845
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.006G248500 [exp]	4.58	0.9873
AT2G01900			DNAse I-like superfamily prote...		Potri.012G041600 [exp]	5.47	0.9790
AT2G23770			protein kinase family protein ...		Potri.009G010300 [exp]	5.91	0.9824
AT2G33580			Protein kinase superfamily pro...		Potri.007G032300 [exp]	6.00	0.9825
AT3G14470			NB-ARC domain-containing disea...		Potri.004G196100 [exp]	7.14	0.9748
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.014G041800 [exp]	7.34	0.9806

Compare expression of checked genes

Potri.015G032200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.