Plant FIBer expression Database

Potri.015G032500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G48430 887 / 0 Dihydroxyacetone kinase (.1)
AT3G17770 879 / 0 Dihydroxyacetone kinase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G041100
[exp]
1068 / 0 AT1G48430 897 / 0.0 Dihydroxyacetone kinase (.1)
Potri.011G011650
[exp]
94 / 2e-23 AT3G17770 98 / 6e-26 Dihydroxyacetone kinase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031311
[exp]
920 / 0 AT3G17770 899 / 0.0 Dihydroxyacetone kinase (.1)
Lus10031879
[exp]
858 / 0 AT3G17770 826 / 0.0 Dihydroxyacetone kinase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0245 EDD PF02733 Dak1 Dak1 domain
CL0245 PF02734 Dak2 DAK2 domain
Representative CDS sequence
>Potri.015G032500.1 pacid=42775357 polypeptide=Potri.015G032500.1.p locus=Potri.015G032500 ID=Potri.015G032500.1.v4.1 annot-version=v4.1
ATGGCTTCTCAAGGAAAGAAACTCATTAACGACCCCAACGCTGTAGTAACTGAGTTCATCGAGGGTCTTGTGGAAACCTACCCTGGATTACAATACCTGG
ATGGCTTTCCAGAGGTCAAGGTTGTGTTACGTGCTGATTATGCAAGCGCTATGCTTGACAAAGTTGCCGTTATATCAGGAGGAGGGAGTGGGCATGAACC
TGCCCATGCTGGATTTGTCGGAGAAGGGATGCTAAGTGCTGCTATTTGTGGAGAAGTTTTTACTTCTCCTCAAGTTGATGCAATTCTATCTGGCATCCGA
GCTGTTACTGGTCCGATGGGATGTCTTTTGATTGTCACGAATTATACTGGTGATCGTCTAAATTTTGGTTTGGCTGCTGAGCAAGCAAAATCTGAAGGTT
ATAAAGTCGAGACTGTAATTGTTGGAGATGATTGTGCATTACCTCCACTGCGAGGCATAGTTGGACGAAGAGGGTTGGCAGGGACTATTCTTGTTAATAA
GATTGCTGGAGCCGCAGCTGCTACTGGCCTTTCTCTCGATGAAGTTGCTGCAGAAGCAAAACGTGCATCTGAAATGGTTGGAACAATGGGCGTTGCTTTG
TCAGTTTGTACATTACCTGGTCAGGTTACATCAGATCGTTTGGGCCCAGGAAAGATGGAACTAGGTCTTGGAATTCATGGGGAACCTGGTGCTGCTGTAG
CAGACCTTCAGCCTGTGGAAGTAGTGGTTTCTCATGTTCTTCAGCAAATTTTATCACCGGATAGGAACTATGTTCCAATCACTCCGGGTAATAGAGTGGT
ACTATTGGTCAATGGACTAGGTGCCACCCCTGCAATGGAGCTAATGATTGTAGCAGGAAAAGCAGTTCCTCAGTTGCAGCTGGAACATGGATTGGCTGTT
GATAGAGTGTATACTGGATCTTTCATGACTTCCCTTGATATGGCAGGATTTTCAATCTCCATAATGAAGGCAGATGAAGCAATTCTGCAACGTTTGGATG
CTTCTACGAAGGCTCCACACTGGCCTGTTGGTGTAGATGGTAATCGCCCACCAGCCAAGATCCCTGTTCCCCTGCCACTGTCTCATTCAGGAAAGAGTGA
TGAGTCATTGAGTCGGCCACAACAGCTCAGTGAACAAGGACATCTTCTTGAGGTGGCTATCGAAGCAGCGGTGAATGCAATCATAGATCTTAGAGACAAT
TTAAATGAATGGGATGGCAGAGTCGGTGATGGTGACTGTGGATCAACAATGTATAGGGGTGCAACAGCAATCCTGGAGGACATGAAGAAACATTATCCCT
TGAATGATGCTGCAGAAACAGTTGGTGAAATTGGATCCTCTATCAGAAGAGTTATGGGAGGAACCAGTGGGATTATATACACAATATTCTGCAAGGCAGC
TTGTGCAAAGTTGAAAGCAAACACCCAGTCAGTTGTCACATCTAAACAATGGGCTGAAGCACTTGAAGCTTCCATAGCTGCTGTCAGTAAATATAGCGGG
GCTAGTGCTGGATTCCGCACATTGCTAGATGCCCTTATTCCAGCTTCAGCTGTTCTTCAGGAGAGGTTAAATGCTGGAGATGATCCTTGCATTGCTTTTC
TCCTCTCATCTGAAGCAGCAGTGGCTGGAGCTGAATCAACCAGACACATGCAGGCACAGGCCGGTCGCTCAGCATATATCTCCCCGGACATCCTTGCTAC
AGTGCCAGACCCTGGGGCTATGGCTGCAGCTTCATGGTATAGAGCAGCAGCCTTAGCCATCAAGAACAAATACCAGGTCCATGAGTAG
AA sequence
>Potri.015G032500.1 pacid=42775357 polypeptide=Potri.015G032500.1.p locus=Potri.015G032500 ID=Potri.015G032500.1.v4.1 annot-version=v4.1
MASQGKKLINDPNAVVTEFIEGLVETYPGLQYLDGFPEVKVVLRADYASAMLDKVAVISGGGSGHEPAHAGFVGEGMLSAAICGEVFTSPQVDAILSGIR
AVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVETVIVGDDCALPPLRGIVGRRGLAGTILVNKIAGAAAATGLSLDEVAAEAKRASEMVGTMGVAL
SVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVEVVVSHVLQQILSPDRNYVPITPGNRVVLLVNGLGATPAMELMIVAGKAVPQLQLEHGLAV
DRVYTGSFMTSLDMAGFSISIMKADEAILQRLDASTKAPHWPVGVDGNRPPAKIPVPLPLSHSGKSDESLSRPQQLSEQGHLLEVAIEAAVNAIIDLRDN
LNEWDGRVGDGDCGSTMYRGATAILEDMKKHYPLNDAAETVGEIGSSIRRVMGGTSGIIYTIFCKAACAKLKANTQSVVTSKQWAEALEASIAAVSKYSG
ASAGFRTLLDALIPASAVLQERLNAGDDPCIAFLLSSEAAVAGAESTRHMQAQAGRSAYISPDILATVPDPGAMAAASWYRAAALAIKNKYQVHE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G48430 Dihydroxyacetone kinase (.1) Potri.015G032500
[exp]
0 1
AT3G56840 FAD-dependent oxidoreductase f... Potri.006G026100
[exp]
1.41 0.6316
AT3G08650 ZIP metal ion transporter fami... Potri.016G140500
[exp]
10.58 0.5897
AT1G69220 SIK1 Protein kinase superfamily pro... Potri.010G157400
[exp]
19.69 0.6201 SIK1.1
AT1G56460 HIT zinc finger ;PAPA-1-like c... Potri.002G195132
[exp]
85.85 0.5616
AT2G01260 Protein of unknown function (D... Potri.010G120700
[exp]
126.49 0.5373
AT5G16600 MYB ATMYB43 myb domain protein 43 (.1) Potri.004G086300
[exp]
129.30 0.5409
AT4G22758 unknown protein Potri.001G116200
[exp]
141.30 0.5386
AT2G39750 S-adenosyl-L-methionine-depend... Potri.010G199300
[exp]
146.71 0.5430
AT1G30970 C2H2ZnF SUF4 suppressor of FRIGIDA4, zinc f... Potri.001G160700
[exp]
147.22 0.5360
AT5G62600 MOS14 modifier of snc1-1, 14, ARM re... Potri.015G068600
[exp]
161.35 0.5336

Potri.015G032500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.