Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17740 1134 / 0 unknown protein AT3G17712 643 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031899 [exp] 1417 / 0 AT3G17740 1154 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08424 [poplar] [flax] NRDE-2 NRDE-2, necessary for RNA interference
Representative CDS sequence Show only first row Show all	>Potri.015G033300.2 pacid=42775634 polypeptide=Potri.015G033300.2.p locus=Potri.015G033300 ID=Potri.015G033300.2.v4.1 annot-version=v4.1 ATGGAAAGAGAAGAAAAGGAAGCAGAAAAAACGTCCTCGTCGCCTTCTTTATTCCCTCTCTTTGCAGCAGCAGTAGCAGCTTCATCATCTATAACTCAAC AACAAACTAACACACCTATAAATGATACAGTTCCTCCTCCTCCTCCTCCGGCATGGCTTTACAACACCAGCTTTACTACTGATCTCTCCATCGTAAATGA CGCCGTTTCCTCTCTCCACCCATCGCAACACTCAGATTCAGACCTCGAAGAACAAGAAGAAGATAAAGACGACCGCGTTTCCAATCAAGGAAAAGACCGG TCTTACCAGTTATTACAAGAACCAGAAGAAGAAAAGACAAGAGAAGCTAAATATTCTCGTTCTGATTCGGATTATTCGGATTCGGGTAGAGAGAGAAAGA AGACGAAGAAAAGACGACATAGCAAGAAGAAGAAGCGAGATAGATCGAGAGATGAGGAGGACGCTAGGGATTTTGGTTCGAGGAAATCAAATGTTAGGGT TTGGGCGGGTTCTGATACGAAAACTACTAAGGATTATTATTTTGATACTCATGGTGATCGCGATAATTTGGTCTATGGCACTCTTTACAGAATGGATGTT CCGAGGTACAAACCTTATAATTCAACAAAACATGATTTTCGAGGGCTTTATCGGCTGAATAAGAGGGGTCCTGGATTTGATAGAGATGGTGATATTGATG CCTTGGATACTCAATTAAAGTCTGGTGGTCGTTATTGGTCTTCCAAGTATGCTGCTGTGGAACGGCATAAGAATTTAAAGCGTCTTCGTGTTCTTGCACG AAAGCAGCCTAGGGTTGTAGTTTCAGATGAATTTATTCCTTTGTCAGATACAGAAATGTCTCATGATGGTGTTGATCATCCTGGTTCTGTTTTGAAGGAT TGTTTAGTTGTTGAAGAATCCTGGGAAGATGAGGTGTTGCGCAAGACTCGGGAGTTTAATAAGTTAACAAGGGAGCACCCTCATGATGAGAAAGTATGGT TGGATTTTGCAGAGTTCCAAGACAAGGTTGCAAGTATGCAGCCTCAGAAAGGTGCCCGTTTGCAGACGCTTGAGAAGAAAATTAGTGTACTGGAAAAGGC CACAGAGCTCAACCCTGACAATGAGGAACTGTTGCTCTGTCTAATGAAGGCTTATCAGAGTAGAGACAGTTCGGATATGCTAATTGGTAGATGGGAGAAG GTACTCATGCATCATTCAGGGAATCACAAGTTGTGGAAAGAGTATTTGCGTGTTGTTCAAGGGGAGTTCTCCAGATTCAAGGTTTCAGATATGCGAAAAA TGTATGCACATGCAATCCAAGCTGTATCTTCTGCATGCAGCAGGCAGTTTAGGCAGGTTTACCAAAATGAGAAGCCTTCTTCTTTGGACCCTGCCATAGT GCAACAGGAGCTTGGTCTGGTTGATATATTTCTTAGTCTTTGCAGGCTCGAGTGGCAGGCTGGGCATCAGGAGTTGGCCACTGCTTTATTTCAGGCTGAA ATTGAATTTACAGTGTTTTGTCCTTCGTTACTTTTAACTGAAAATAGCAAACTCAGGCTGTTTGAGCACTTCTGGAATAGTGATTGTCCAAGAGTTGGAG AAGAAGGGGCTGTCGGGTGGTCCACTTGGCTGGAGAAAGAGGAGGAAAATAGGCAAAGGATTTTGAAAGAGGAGGCTTCACATGATGAAGACAGAGGTGG TTGGACTGGCTGGTCAGAACTGCTATCCAAACATGAGGAAACTGCTAAGAACCAAGAAAATGTAGTCCATAATGATGTGACTGCTGATGAGTTTCTAGAG GAATCTGAGAATGAGGATATCAAGCAGGAAGATGATACTGAAGCATTGCTAAAACAGCTTGGCATTGATGTGGATGCTGAGCCTAGTAGTGAGGTTAAAG ACAGCTCAACTTGGGCTAGGTGGTCTAAAGAAGAGTCCTTGAGAGATTGTAATCAATGGATGCCTGTTCATGGCAGGATCTCTCCCAGTAGTGGGACCCC TGATGGAGAAGCTGATGAACATTTCCTAAGAGCTGTATTATTTGAAGATGTCATTGAATACCTATTCTCTTTAAACTCTCAAGAGGCCCGCTTATCTCTA GTATCTCAATTTATTGAATTCTTTGGTGGGGACCTGTCGCAATGGATTTGCACAAACAGTTCAAGTTGGAAGGACAAACTCCTGAGCATTGAGGTGTTGC CAGATCCTATATCAAAGAACTTGAGAAGCCTTCATGATATTTTGGACAGATCAGAAGGCAGTTCAAGCTCTAACAGTTTTGATTTACTATCGGGTATCAC CAGTAACAGCTCTAAAAGGACTGATGCAATGAAATTTCTTCGAAATGCTGTATTACTTTGCTTAACAGCTTTTCCACGTAATCACATATTAGAAGAAGCT GCTCTTGTCGCTGAAGATTTTTCTGTTACGAAAATGGATTCTACTACCCCATGTCGTGTGCTGGCAAAGTCCCTGTTAAAGAATGATCGACAGGATGTTT TGCTATGCGGAGTTTATGCACGGAGAGAAGCTGTTTTTGGTAATATTGGTTATGCAAGAAGAGTCTTTGACTTGGCATTGACATCTGTTGAAGGGCTTCC GCCTGATTTACGATCTAATGCTCCGCTTTTATATTTCTGGTATGCCGAGACAGAACTTGCCAATAGTTCTGGAAATAATCAAGAATCACCTTCTCGTGCA TTGCATATTTTATCCTGCTTAGGAAATGGTGTAACGTACAAACCATTTGAATCTAAACCATCAAGCCTGCAATTATTGAGAGCACACCAGGGGTTTAAAG AAAGGTTGAAAATAGTACGATCAGCATGGGTGCGCGGTGTTGTAGATGATCAATCTCTTGCTCTAACTTGCTCAGCAGCTTTATTTGAAGAATTGACGAC TGGATGGGCTGCAGGTATTGCAGTTTTAGATGAGGCGTTCACAATGGTGCTTCCAGATAGAAGATGCCACAGTTACCAACTTGAGTTTTTGTTCAACTAT CATGTAAGGATGCTTTTAAGATATCATAAGCAATCAAGTTTATCAAAAGTCTGGGACTCCATCTTGAAGGGGCTGCAAATATATCCTTCCAGCCCTGAAC TATTTAAGACCTTATTGGAGATCAGCCATCTTTATACAACACCCAATAAAGTGCGCTCGATGCTTGATGACTTCTTCCACAAGAAACCATCTGTAATTCT TTGGCTTTTCGCGCTATCATTTGAGATGAGTCGGGGAAGCTCCCAGCATAGAATCCATGGGTTATTTGAAAGAGCATTAGAAAATGAGAGATTGAGCAAC TCAGTCATACTCTGGCGTTTGTACATTGCTTATGAAATTGACATAGCATGCAATCCTTCAGCAGCCAAGCGTGCTTTCTTCCGAGCTATTCACGCCTGTC CATGGTCAAAAAAACTATGGCTTGATGGTTTTCTCAAGTTGAACTCCATCCTAACTGTGAAAGAGTTGTCAGATCTCCAAGACGTAATGCGGGATAAGGA GTTGAATCTTAGAACTGATATTTACGAGATTCTTCTGCAAGATGAGTTTGTATCATGA
AA sequence Show only first row Show all	>Potri.015G033300.2 pacid=42775634 polypeptide=Potri.015G033300.2.p locus=Potri.015G033300 ID=Potri.015G033300.2.v4.1 annot-version=v4.1 MEREEKEAEKTSSSPSLFPLFAAAVAASSSITQQQTNTPINDTVPPPPPPAWLYNTSFTTDLSIVNDAVSSLHPSQHSDSDLEEQEEDKDDRVSNQGKDR SYQLLQEPEEEKTREAKYSRSDSDYSDSGRERKKTKKRRHSKKKKRDRSRDEEDARDFGSRKSNVRVWAGSDTKTTKDYYFDTHGDRDNLVYGTLYRMDV PRYKPYNSTKHDFRGLYRLNKRGPGFDRDGDIDALDTQLKSGGRYWSSKYAAVERHKNLKRLRVLARKQPRVVVSDEFIPLSDTEMSHDGVDHPGSVLKD CLVVEESWEDEVLRKTREFNKLTREHPHDEKVWLDFAEFQDKVASMQPQKGARLQTLEKKISVLEKATELNPDNEELLLCLMKAYQSRDSSDMLIGRWEK VLMHHSGNHKLWKEYLRVVQGEFSRFKVSDMRKMYAHAIQAVSSACSRQFRQVYQNEKPSSLDPAIVQQELGLVDIFLSLCRLEWQAGHQELATALFQAE IEFTVFCPSLLLTENSKLRLFEHFWNSDCPRVGEEGAVGWSTWLEKEEENRQRILKEEASHDEDRGGWTGWSELLSKHEETAKNQENVVHNDVTADEFLE ESENEDIKQEDDTEALLKQLGIDVDAEPSSEVKDSSTWARWSKEESLRDCNQWMPVHGRISPSSGTPDGEADEHFLRAVLFEDVIEYLFSLNSQEARLSL VSQFIEFFGGDLSQWICTNSSSWKDKLLSIEVLPDPISKNLRSLHDILDRSEGSSSSNSFDLLSGITSNSSKRTDAMKFLRNAVLLCLTAFPRNHILEEA ALVAEDFSVTKMDSTTPCRVLAKSLLKNDRQDVLLCGVYARREAVFGNIGYARRVFDLALTSVEGLPPDLRSNAPLLYFWYAETELANSSGNNQESPSRA LHILSCLGNGVTYKPFESKPSSLQLLRAHQGFKERLKIVRSAWVRGVVDDQSLALTCSAALFEELTTGWAAGIAVLDEAFTMVLPDRRCHSYQLEFLFNY HVRMLLRYHKQSSLSKVWDSILKGLQIYPSSPELFKTLLEISHLYTTPNKVRSMLDDFFHKKPSVILWLFALSFEMSRGSSQHRIHGLFERALENERLSN SVILWRLYIAYEIDIACNPSAAKRAFFRAIHACPWSKKLWLDGFLKLNSILTVKELSDLQDVMRDKELNLRTDIYEILLQDEFVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17740			unknown protein		Potri.015G033300 [exp]	0	1
AT5G55600			agenet domain-containing prote...		Potri.001G365800 [exp]	1.41	0.9246
AT4G16310		LDL3	LSD1-like 3 (.1)		Potri.005G235400 [exp]	1.73	0.9265
AT4G39420			unknown protein		Potri.007G078650 [exp]	2.00	0.9141
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060900 [exp]	2.44	0.9214
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Potri.014G055800 [exp]	3.46	0.9030
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Potri.006G085700 [exp]	3.74	0.9007
AT1G11060			WAPL (Wings apart-like protein...		Potri.011G049300 [exp]	6.63	0.8958
AT3G26850			histone-lysine N-methyltransfe...		Potri.006G227200 [exp]	7.34	0.9000
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Potri.012G073700 [exp]	7.54	0.8781	CCSPK5.3
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.010G056900 [exp]	8.83	0.8916

Compare expression of checked genes

Potri.015G033300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.