Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73460 1357 / 0 Protein kinase superfamily protein (.1) AT1G73450 1326 / 0 Protein kinase superfamily protein (.1) AT3G17750 1216 / 0 Protein kinase superfamily protein (.1) AT2G40120 515 / 1e-170 Protein kinase superfamily protein (.1) AT4G03175 175 / 1e-50 Protein kinase superfamily protein (.1) AT5G35980 191 / 3e-50 YAK1 yeast YAK1-related gene 1 (.1.2) AT4G24740 171 / 6e-46 AME1, AFC2 FUS3-complementing gene 2 (.1.2) AT1G13350 171 / 1e-43 Protein kinase superfamily protein (.1.2) AT4G32660 162 / 5e-43 AME3 Protein kinase superfamily protein (.1.2.3) AT3G25840 167 / 1e-42 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G039700 [exp] 2007 / 0 AT1G73460 1343 / 0.0 Protein kinase superfamily protein (.1) Potri.008G069000 [exp] 544 / 1e-179 AT2G40120 607 / 0.0 Protein kinase superfamily protein (.1) Potri.010G188400 [exp] 540 / 3e-178 AT2G40120 576 / 0.0 Protein kinase superfamily protein (.1) Potri.013G075300 [exp] 201 / 8e-53 AT5G35980 1134 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.019G043400 [exp] 193 / 3e-50 AT5G35980 1088 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.006G244400 [exp] 168 / 4e-45 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G126900 [exp] 172 / 2e-43 AT3G25840 727 / 0.0 Protein kinase superfamily protein (.1.2) Potri.015G085700 [exp] 162 / 6e-43 AT4G24740 747 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.008G119100 [exp] 170 / 1e-42 AT3G25840 689 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042297 [exp] 1586 / 0 AT1G73450 1335 / 0.0 Protein kinase superfamily protein (.1) Lus10031902 [exp] 1562 / 0 AT1G73450 1318 / 0.0 Protein kinase superfamily protein (.1) Lus10031329 [exp] 895 / 0 AT1G73460 645 / 0.0 Protein kinase superfamily protein (.1) Lus10026360 [exp] 848 / 0 AT1G73460 680 / 0.0 Protein kinase superfamily protein (.1) Lus10028283 [exp] 528 / 2e-174 AT2G40120 587 / 0.0 Protein kinase superfamily protein (.1) Lus10040203 [exp] 520 / 3e-169 AT2G40120 590 / 0.0 Protein kinase superfamily protein (.1) Lus10031328 [exp] 407 / 1e-134 AT1G73450 405 / 6e-135 Protein kinase superfamily protein (.1) Lus10020366 [exp] 197 / 3e-51 AT5G35980 1159 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10009542 [exp] 196 / 5e-51 AT5G35980 1147 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10036878 [exp] 167 / 3e-44 AT4G24740 662 / 0.0 FUS3-complementing gene 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.015G033400.1 pacid=42776098 polypeptide=Potri.015G033400.1.p locus=Potri.015G033400 ID=Potri.015G033400.1.v4.1 annot-version=v4.1 ATGGAGGAGACAAGCTCAGTTGATGTGATTCTGGACTTTCTGAAGAAAAATCGCTTCACAAGAGCAGAGGCAGCATTGCGCAGTGAGCTTGGTAACCTCC CTGATCTGAATGGATTCCTTCAAAAACTTGCCCTTGAAGATAAGAACTCGGGGAAGGTGGTGGAAGAAGAGAATGGGGGCAAATTAACCTGTCATCCTCA GGGGTCAGGTCCTCAACATAGTGGTGAAATTTCTAAGGAACTTATTGTGAAAGAAATAGAGTGTGGGGTGGATAGAAATGGGACTGAAAGCAAATGGAAA AACTCTGCTTCTGCTGGGGAACGGGGTGGTAAAAATAATGAAGCAATTGATTCAGAGGATACCGTGCTTGGTTTGTATTCATGGAACTTTAATCCAAGCA ATGGTCCGTCTAATCCATACAAGAATGATGTTGGTACTAGCACCAGTAACTTCTCTGCTAGAGCAAAAGCCAAATCTGGAGAAGAGTTTATCTTAACTGG TGAAAAGAAAAGTTCATGGCTTGGAAGCAAAAGTACCAGTGATGCCAATGCAGAATCCAAGTATAACAAAATTGAAACGAATGAATTGAAGGAACTTGAT TGGCAACTTAAAACTACCGTTGCATTCTCTGCGGGTAACCCATGGTCTCAGAATGAGGAACCCGCAAATTCTTCCTCAGACCTGTGGAAAGATTGTTCTG TCAAGACTGTTTTTCCATTCCCCAAGGGGGAGGCATTGACCAGTTATGATGATACTATTACAAATTCGGACAAAAGAGATGGAAAGAAGAAAGCAGGTAC AAGTGATCTTAGGGCGGCTATCAAAGAACAGGTGGATGAGGTTGGAAGAACTTTGTTCTTTGGAAAGTCTCAAGAGAGCACAGAGCAGAAGAATTTAAGT GGCTTAGGGTTTTCACTTGTATCTGATATTCCAAAGGAAGAATTTCCTAGGCTTCCACCAGTTAAACTCAAGTCGGAGGATAAGCCATCAATCAATTGGC AGGAAACGTTCGAGCGTGATGGGCCAAGTTCAAAGGTCATCAGCGCTGATAATAGCTACCTTATAGGTTCCTATCTCGATGTTCCTGTCGGACAAGAAAT CAATTCTTCAGGTGGAAAAAGGATTGCAGGAGGCAGCTGGCTATCTGTAAGTCAGGGAATTGCTGAGGATGCGTCTGATCTAGTTTCTGGGTTTGCTACT GTTGGTGATGGATTAAGTGAATCTATTGATTATCAAAATGAGTATTGGGATTCTGATGAATATGATGACGATGATGATGTTGGATATATGAGACAACCTA TCGAGGACGAGGCCTGGTTTCTGGCACATGAAATTGATTACCCAAGTGACAATGAAAAGGGTGCTGGGCATGGGAGCGTTCCAGACCCCCAGGATAGAGT TCCAACCAAAGATGAAGACGATGATCAATCTTTTGCCGAGGAGGATTCTTACTTCTCTGGCGAGCAGATATTTCAAGCAAAAACTGTTGAACCAGTCACA GCATCAGATGATCCTATAGGGTTATCAGTGACAGAAATGTATGGTACGAATAATGGGAGTGATTTAATTTCGCAATATGATGGGCAGTTGATGGATGAAG AAGAACTAAGTTTGATGCGAGCAGAACCTGTCTGGCAGGGGTTTGTCACACAGACAAATGAACTCATCATGATAGGAGATGGGAAGGTTTTGAATGAGTG TGGAAGGCCACAGTTAGATGATATTTGTATGGATGACGATCAACATGGTTCAGTTAGATCGATTGGTGTGGGAATCAACAGTGATGCTGCTGATATTGGA AGTGAAATTCGGGAAAGTTTGGTTGTAGGCAGTAGTGAAGGGGATGTAGAGTACTTTCGTGATCATGACACTGGAGTTGGGGGATCTAGATCTTCTCACC ATGTCTCAGACAAGAAATATGTTGATAAACAAAACAGGGATAAGAAGAAACTTAATAAATATGTGGTTGGAAGTGACCAAGACATGCATGCTCAAGGTAG AAGTCATGCAGATGGCGGGTTTTCATTTCCCCCACCACTGAGGAATGAACAGTTATTGCAGGCAGGCTCTAGTAAATCTTTATGGTCAGACAACTGCAAT GCGGTTGTCAGTGAAGAAACAAATGATCACTTGAATGCTTTGACAGGGCCTGATGACACATGGCAGCGGAAAAGCTGTGATTCCTCAACTGTTAAAAGTT CTAGGGATGAAAATAATACAAATGCTGTGAGATCAGCAAATTCTAGTCCCTCTTCTCTCTCAAATTATGGTTATACAGAACCAGAGCATGCCATAAAAGA AAGAGATGAGAAGATTGGTGGTGTGAGGGAAGAAGATCCTGTGGCATCCTTGGAGGATGAAGAAGCTGCTGCTGTTCAAGAGCAAGTAAGGCAAATCAAG GTTCAGGAGGAGGAATTTGAAACTTTCAACCTTAAGATTGTGCATAGGAAAAACCGAACTGGCTTTGAGGAGGACAAGAACTTCCATGTTGTGTTGAATT CTGTAATTGCTGGTCGTTATCATGTTACTGAGTATCTTGGCTCAGCTGCTTTTAGTAAAGCTATACAAGCACATGATCTGCACACAGGCATGGATGTTTG TGTGAAAATTATAAAAAACAACAAGGACTTCTTTGATCAAAGTCTTGACGAGATAAAGCTTTTAAAGTATGTCAACAAGCATGATCATGCTGACAAGTAC CACATTCTCAGATTGTATGATTATTTCTACTACCGAGAGCATTTGTTAATCGTATGTGAGCTTCTCAAGGCAAACCTATATGAGTTCCATAAGTTCAATA GAGAATCAGGAGGGGAGGTATACTTCACAATGCCTAGATTGCAGTCAATTACCACTCAATGTTTGGAGGCACTTCAGTTTTTGCATGGCCTTGGTCTTAT ACACTGTGATTTAAAACCCGAGAATATATTGGTGAAAAGCTATAGTAGATGTGAGGTGAAAGTCATTGATCTCGGGAGTAGCTGTTTTGAGACAGATCAT CTGTGCTCCTATGTTCAATCCAGGTCATATCGTGCACCAGAAGTTATCCTAGGACATCCGTATGATAAGAAGATAGATGTTTGGTCACTTGGCTGCATTT TGGCAGAACTTTGCACTGGAAATGTCCTGTTCCAAAACGATTCACCAGCAACGTTATTGGCACGAGTTATTGGAATTATAGGTCCCATTGATCAAAGCAT GCTAGCTAAAGGACGAGATACATACAAGTATTTTTCCAAGAATCACATGCTTTATGAGCGGAATCAGGATACTAGCAGACTGGAATACCTGATTCCAAAA AAGACATCCTTGAGGCACCGATTGCCAATGGGGGACCAAGGCTTCATTGACTTTGTTTCTCATTTGCTTGAAGTAAACCCAAAGAAACGCCCTTCTGCAT CCGAGGCTCTGAAGCACCCTTGGCTATCATACCCTTATGAACCCATATCAGCTTGA
AA sequence Show only first row Show all	>Potri.015G033400.1 pacid=42776098 polypeptide=Potri.015G033400.1.p locus=Potri.015G033400 ID=Potri.015G033400.1.v4.1 annot-version=v4.1 MEETSSVDVILDFLKKNRFTRAEAALRSELGNLPDLNGFLQKLALEDKNSGKVVEEENGGKLTCHPQGSGPQHSGEISKELIVKEIECGVDRNGTESKWK NSASAGERGGKNNEAIDSEDTVLGLYSWNFNPSNGPSNPYKNDVGTSTSNFSARAKAKSGEEFILTGEKKSSWLGSKSTSDANAESKYNKIETNELKELD WQLKTTVAFSAGNPWSQNEEPANSSSDLWKDCSVKTVFPFPKGEALTSYDDTITNSDKRDGKKKAGTSDLRAAIKEQVDEVGRTLFFGKSQESTEQKNLS GLGFSLVSDIPKEEFPRLPPVKLKSEDKPSINWQETFERDGPSSKVISADNSYLIGSYLDVPVGQEINSSGGKRIAGGSWLSVSQGIAEDASDLVSGFAT VGDGLSESIDYQNEYWDSDEYDDDDDVGYMRQPIEDEAWFLAHEIDYPSDNEKGAGHGSVPDPQDRVPTKDEDDDQSFAEEDSYFSGEQIFQAKTVEPVT ASDDPIGLSVTEMYGTNNGSDLISQYDGQLMDEEELSLMRAEPVWQGFVTQTNELIMIGDGKVLNECGRPQLDDICMDDDQHGSVRSIGVGINSDAADIG SEIRESLVVGSSEGDVEYFRDHDTGVGGSRSSHHVSDKKYVDKQNRDKKKLNKYVVGSDQDMHAQGRSHADGGFSFPPPLRNEQLLQAGSSKSLWSDNCN AVVSEETNDHLNALTGPDDTWQRKSCDSSTVKSSRDENNTNAVRSANSSPSSLSNYGYTEPEHAIKERDEKIGGVREEDPVASLEDEEAAAVQEQVRQIK VQEEEFETFNLKIVHRKNRTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKYVNKHDHADKY HILRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITTQCLEALQFLHGLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDH LCSYVQSRSYRAPEVILGHPYDKKIDVWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGPIDQSMLAKGRDTYKYFSKNHMLYERNQDTSRLEYLIPK KTSLRHRLPMGDQGFIDFVSHLLEVNPKKRPSASEALKHPWLSYPYEPISA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73460			Protein kinase superfamily pro...		Potri.015G033400 [exp]	0	1
AT5G43310			COP1-interacting protein-relat...		Potri.008G168300 [exp]	1.73	0.7974
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Potri.010G211100 [exp]	7.48	0.7405
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Potri.019G052100 [exp]	9.48	0.7256	Pt-XPO1.1
AT1G74160			unknown protein		Potri.012G061900 [exp]	11.22	0.7229
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Potri.006G106600 [exp]	12.44	0.7637
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Potri.016G031900 [exp]	12.68	0.7475
AT4G11270			Transducin/WD40 repeat-like su...		Potri.003G132900 [exp]	15.74	0.7891
AT3G12590			unknown protein		Potri.010G207900 [exp]	16.73	0.7463
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Potri.012G075932 [exp]	24.24	0.6985
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.010G105600 [exp]	26.15	0.6587

Compare expression of checked genes

Potri.015G033400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.