Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17700 839 / 0 ATCNGC20, CNBT1 CYCLIC NUCLEOTIDE-GATED CHANNEL 20, cyclic nucleotide-binding transporter 1 (.1) AT3G17690 748 / 0 ATCNGC19 CYCLIC NUCLEOTIDE-GATED CHANNEL 19, cyclic nucleotide gated channel 19 (.1) AT4G30560 322 / 5e-99 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT1G19780 318 / 3e-97 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT5G57940 316 / 1e-96 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT2G28260 311 / 4e-95 ATCNGC15 cyclic nucleotide-gated channel 15 (.1) AT2G23980 312 / 6e-95 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT1G15990 304 / 2e-92 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT2G24610 302 / 2e-91 ATCNGC14 cyclic nucleotide-gated channel 14 (.1) AT1G01340 301 / 5e-91 ACBK1, ATCNGC10 cyclic nucleotide gated channel 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G034000 [exp] 1287 / 0 AT3G17700 905 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 20, cyclic nucleotide-binding transporter 1 (.1) Potri.012G038700 [exp] 1085 / 0 AT3G17700 818 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 20, cyclic nucleotide-binding transporter 1 (.1) Potri.014G097900 [exp] 326 / 2e-100 AT1G01340 901 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.018G097600 [exp] 319 / 3e-98 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.012G002200 [exp] 313 / 1e-95 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.018G106100 [exp] 313 / 2e-95 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.002G170000 [exp] 312 / 4e-95 AT1G01340 909 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.015G019100 [exp] 308 / 8e-94 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.001G043900 [exp] 301 / 1e-90 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031891 [exp] 911 / 0 AT3G17700 887 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 20, cyclic nucleotide-binding transporter 1 (.1) Lus10031320 [exp] 882 / 0 AT3G17700 888 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 20, cyclic nucleotide-binding transporter 1 (.1) Lus10021461 [exp] 316 / 7e-97 AT2G28260 1029 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10036260 [exp] 315 / 1e-94 AT4G30560 1102 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10022155 [exp] 311 / 2e-94 AT4G30560 1095 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10037394 [exp] 306 / 3e-93 AT2G28260 983 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10015510 [exp] 307 / 4e-93 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10014925 [exp] 303 / 3e-92 AT5G53130 1031 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10019983 [exp] 301 / 6e-91 AT4G30360 1000 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10019014 [exp] 309 / 4e-90 AT5G53130 1122 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF00520 [poplar] [flax] Ion_trans Ion transport protein
Representative CDS sequence Show only first row Show all	>Potri.015G033900.1 pacid=42776216 polypeptide=Potri.015G033900.1.p locus=Potri.015G033900 ID=Potri.015G033900.1.v4.1 annot-version=v4.1 ATGGCTAACCATGACAAAGATAATATTCCAACGCTGTCAGACACACATCCAAAGTCAGTGGATGAAAATGTGGATTCTCGATTTCGGCCATTTCTTTCCA GGACTCAAAGTGCATCAACTTCCATTCCTTTGGATTCCATGGAGTCCTATGGTTCTGAAACCAACATCGTTGGCTTTACTGGTCCACTGCGTAGTGCAAG AAAAGCTCCACTGGTACAGATGAGTGGTCCATTATATATCAACCGCAACACTGAAAACTTGTTTCTGGCAAAACATGGTGTAACAACTCGCAAAAAGGTG GATTCCAAGCCAGAAAAATATCCATCTCTTAATGGAAGGGATAAGAATGACTGGGATGACAACTATACTGCTACAAATGCCCATTTAATGAGGTCTGGGC AACTAGGCATGTGCAATGATCCTTACTGCACAACATGCCCATTGTATTACCATTCTACAGCTTCACAGCAAAGACATGCAAAAACTTCTAGTATATTTGA TTCCAAGTTTCATAGTGTTCTCTATGGAGATGCTAAAGGCTGGGCAAGGAGATTCAATAATGCTATAAACTCATATATTCCTGGAGTTATGAATCCTCAT ACTAAAGTTGTTCAGGAGTGGAACAAATTTTTTGTCCTTTCTTGCTTGGGGGCAATTTTTATTGACCCCTTGTTTTTCATCTTGCTGTCGGTGAAACAGG AAGAAAAGTGCATAGTTATTAATTGGGGAATGACTAAAGCAGTTGTGTTTTTAAGGTGCTTGACTGATGCCATCTTCTTACTGAACATACTTCTTCAGTT TAGGTTAGCTTATGTAGCTCCTGAATCTAGAGTGGTTGGTGCTGGAGAGTTAGTTGACCATCCAAAGAAAATTGCCAAGCACTATCTCCGAGGATTTTTT TTTATTGACTTATTTGTGGTATTACCACTTCCACAGATCACTTTGTTTTTACTACTCCTACCAAAAGGATTGGATTCCTTAGGAGAAAACTATGCCAAGA ATATTTTACAGGCAGTGATTCTTGTCCAGTACATTCCAAGGTTGTTGAGGTTTATTCCTCTTCTCATTGGTCCAAATGGCTTCATATTTGAGACGGCTTT GGCAAACTTCTTTATAAATCTTTTCACCTTTTTGTTGTCTGGCCATATCATTGGATTGTGTTGGTATCTCTTTGGCTTGCAGAGGTTAATTCATTGTCTT CATCATGCCTGCCGTAATTCTAGTTATAAAAATGACTGCATGAAGTGGATAGATAGTGGTGGACACAAGAAACATGGGTCTGATACAAGCTGGGATAGCT GGAAAGAAAATGCCAATGCCAGTGCTTGTTTTACGTTGGATGGTTTTTCTTATGGAATCTATGCCCATGCAGTCAATCTCACTGGGGAGAATACCATCAT CAGATACACATATTCATTAGTTTGGGGAATCCAGCAAATTAGCACTCTTGCTGGAAACCAAACACCGAGTTATAACTCTGAGGAAATCCTCTTTACCATG GCGATAATTGGAATCGGCCTTTTGCTCTTTGCTTTTCTCATAGGAAATATGCAGAACTTTCTTCAGGCTCTCGGTAGGAGGAGGGCAGAAATGTCACTAA GGCGACGTGATGTTGATAAGTGGATGAGACATCGACGCTTGCCGGTAGAACTAAGAAGGAGAGTGGTAGAAGCTGGACGGTACCATTGGGCTGCTACTAG AGGTGTAAATGAAGAAATGCTTCTGGAGAATTTGCCTGAAGACCTCCAGAGGGATATAAGAAGACACCTCTTCAAATTTGTCAAGAAAGTATGGATTTTT CGCCTGATGGATGAACATGTCTTAGATGCTGTTTGTGAGAAATTGAAACAGAAAATATACATTAAGGGAAGTGAAGTTTTTTGTGTTGGTGGTCTGGTTG AGAAGATGGTTTTTATTGTGCGTGGAAAATTGGAAAGCATCGGACATGATGGGACGGTGGTAGCCTTATCTGAAGGGAATGTTTGTGGTGAGGAACTTTT CACATGGTTTCTTGAGCATAGTTCAGTGTCCAAAGATGGAAGGAAAATCAAGATTTCTGGACAGCGTTTGATTAGCAGCAGGACAGTAAGATGCTTAACA AATGTAGAAGCATTTTCACTCAGTGCCGCAGACCTTGAACAAGTCACCAGCCTTTTTGCAAGAAACCTGCGGAATCCGCTCGTCCAAGGAGCCATAAGGT ATCAATCTCCCTACTGGAGAGCCCTTGCTGCTACCCACATTCAAGTTGCCTGGAGATATCGGCAGAAGTGTCTGAAGCATAGCAAGACCTCTCAATCAAA TCATATTACCTCTCTCTCGAATCATTCTTCTTTCTCGAGGGTTTAG
AA sequence Show only first row Show all	>Potri.015G033900.1 pacid=42776216 polypeptide=Potri.015G033900.1.p locus=Potri.015G033900 ID=Potri.015G033900.1.v4.1 annot-version=v4.1 MANHDKDNIPTLSDTHPKSVDENVDSRFRPFLSRTQSASTSIPLDSMESYGSETNIVGFTGPLRSARKAPLVQMSGPLYINRNTENLFLAKHGVTTRKKV DSKPEKYPSLNGRDKNDWDDNYTATNAHLMRSGQLGMCNDPYCTTCPLYYHSTASQQRHAKTSSIFDSKFHSVLYGDAKGWARRFNNAINSYIPGVMNPH TKVVQEWNKFFVLSCLGAIFIDPLFFILLSVKQEEKCIVINWGMTKAVVFLRCLTDAIFLLNILLQFRLAYVAPESRVVGAGELVDHPKKIAKHYLRGFF FIDLFVVLPLPQITLFLLLLPKGLDSLGENYAKNILQAVILVQYIPRLLRFIPLLIGPNGFIFETALANFFINLFTFLLSGHIIGLCWYLFGLQRLIHCL HHACRNSSYKNDCMKWIDSGGHKKHGSDTSWDSWKENANASACFTLDGFSYGIYAHAVNLTGENTIIRYTYSLVWGIQQISTLAGNQTPSYNSEEILFTM AIIGIGLLLFAFLIGNMQNFLQALGRRRAEMSLRRRDVDKWMRHRRLPVELRRRVVEAGRYHWAATRGVNEEMLLENLPEDLQRDIRRHLFKFVKKVWIF RLMDEHVLDAVCEKLKQKIYIKGSEVFCVGGLVEKMVFIVRGKLESIGHDGTVVALSEGNVCGEELFTWFLEHSSVSKDGRKIKISGQRLISSRTVRCLT NVEAFSLSAADLEQVTSLFARNLRNPLVQGAIRYQSPYWRALAATHIQVAWRYRQKCLKHSKTSQSNHITSLSNHSSFSRV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.015G033900 [exp]	0	1
AT2G34930			disease resistance family prot...		Potri.015G024600 [exp]	5.19	0.7070
AT5G40100			Disease resistance protein (TI...		Potri.006G283100 [exp]	7.74	0.7047
AT5G36930			Disease resistance protein (TI...		Potri.006G282600 [exp]	10.00	0.7274
AT2G34930			disease resistance family prot...		Potri.015G025200 [exp]	10.95	0.6808
AT5G36930			Disease resistance protein (TI...		Potri.006G283400 [exp]	12.48	0.7080
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.012G090100 [exp]	15.87	0.6628
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G008600 [exp]	25.25	0.6797
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Potri.010G158100 [exp]	38.57	0.6471
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G049000 [exp]	54.06	0.6345
AT3G14470			NB-ARC domain-containing disea...		Potri.017G015600 [exp]	59.76	0.6331

Compare expression of checked genes

Potri.015G033900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.