Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATCNGC19.5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17700 905 / 0 ATCNGC20, CNBT1 CYCLIC NUCLEOTIDE-GATED CHANNEL 20, cyclic nucleotide-binding transporter 1 (.1) AT3G17690 800 / 0 ATCNGC19 CYCLIC NUCLEOTIDE-GATED CHANNEL 19, cyclic nucleotide gated channel 19 (.1) AT2G28260 358 / 5e-113 ATCNGC15 cyclic nucleotide-gated channel 15 (.1) AT4G30560 355 / 1e-111 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT1G19780 356 / 2e-111 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT4G01010 353 / 8e-111 ATCNGC13 cyclic nucleotide-gated channel 13 (.1) AT2G23980 353 / 4e-110 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT1G01340 351 / 8e-110 ACBK1, ATCNGC10 cyclic nucleotide gated channel 10 (.1.2) AT5G53130 350 / 2e-109 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) AT2G24610 349 / 5e-109 ATCNGC14 cyclic nucleotide-gated channel 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G033900 [exp] 1296 / 0 AT3G17700 838 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 20, cyclic nucleotide-binding transporter 1 (.1) Potri.012G038700 [exp] 1196 / 0 AT3G17700 818 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 20, cyclic nucleotide-binding transporter 1 (.1) Potri.012G002200 [exp] 368 / 2e-116 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.018G097600 [exp] 365 / 8e-116 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.014G097900 [exp] 366 / 1e-115 AT1G01340 901 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.015G019100 [exp] 365 / 4e-115 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.002G170000 [exp] 361 / 1e-113 AT1G01340 909 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.018G106100 [exp] 356 / 1e-111 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.009G010700 [exp] 349 / 3e-109 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031891 [exp] 979 / 0 AT3G17700 887 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 20, cyclic nucleotide-binding transporter 1 (.1) Lus10031320 [exp] 954 / 0 AT3G17700 888 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 20, cyclic nucleotide-binding transporter 1 (.1) Lus10021461 [exp] 362 / 4e-114 AT2G28260 1029 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10037394 [exp] 353 / 5e-111 AT2G28260 983 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10022155 [exp] 350 / 2e-109 AT4G30560 1095 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10015510 [exp] 348 / 1e-108 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10042434 [exp] 347 / 4e-108 AT2G24610 916 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10036260 [exp] 347 / 1e-106 AT4G30560 1102 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10014925 [exp] 341 / 2e-106 AT5G53130 1031 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10019014 [exp] 354 / 5e-106 AT5G53130 1122 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF00520 [poplar] [flax] Ion_trans Ion transport protein
Representative CDS sequence Show only first row Show all	>Potri.015G034000.4 pacid=42776286 polypeptide=Potri.015G034000.4.p locus=Potri.015G034000 ID=Potri.015G034000.4.v4.1 annot-version=v4.1 ATGGCTAACCATGACAAAGATGATATTCCAATGCTGTCAGACACACATCCAAAGTCAGTGGATGAAAATGTGGATTCTCGATTTCGGCCATTTCTTTCCA GGACTCAAAGTGCATCAACTTCCATTCCTTTGGATTCCATGGAGTCCTATGGTTCTGAAACCAACCTTGTTGGCTTTACTGGTCCACTGCGTAGTGCAAG AAAAGCTCCACTGGTACAGATGAGTGGTCCATTATATATCAACCGCAACACTGAAAACTTGTTTCTGGCAAATCATGGTGTAACAGCTCGCAAAAAGGTG GAGCCCAAGCCAGAAAAATATCCATCTCTTAATGGAATGGATAAGAATGACTGGGATGACAAGTATACTGCTACAAATGCCCATTTAATGAGGTCTGGGC AACTAGGCATGTGCAATGATCCTTACTGCACAACATGCCCATCATATTACCATTCTAGAGCTTCGCAGCAAAGACATGCAAAAACTTCTAGTATATTTGA TTCAAAGTTTCATAGTGTTCTCTATGGAGATGCTAAAGGTTGGGCAAGGAGATTCAATAATGCTATAAACTCATATATTCCTGGAGTTATGAATCCTCAT GCGAAAGTTGTTCAGAAGTGGAACAAGTTTTTTGTCATTTCTTGCTTGGTGGCAATTTTTGTTGACCCCTTGTTTTTCATCTTGCTGTCGGTGAAACAGG ATGAAAAGTGCATAGTTATTGATTGGGGAATGACTAAAGCAGTTGTGTCTTTTAGGTGCTTGACTGATGCAATCTACTTACTGAACATATTTCTTCAGTT TAGATTAGCTTATGTAGCTCCTGAATCTAGAGTGGTTGGTGCTGGAGAGTTAGTTGACCATCCAAAGAAAATTGCTATGCACTATCTCCGAGGATGTTTT TTTATTGACTTATTTGTTGTATTACCACTTCCACAGATCATTGTGTTAGCACTCCTACCAAAAGGATTGGATTCCTCCGGAGCAAACTATGCCAAGAATC TCTTACGGGCAGTTATTCTTGTCCAGTACATTCCAAGGTTGTTTAGGTTTATTCCTCTTCTCATTGGTCAGTCTCCAAATGGCTTCATATTTGAGACAGC TTCGGCGAACTTCTTTATAAATCTTTTCACCTTTGTGTTGTCTGGCCATATCATTGGGTCGTGTTGGTATCTCTTTGGGTTGCAGAGGGTAAATCAATGT CTTCGTGATGCCTGCCATGATACTAGTTATCAACATGAATGCAAGAAGTTTATAGATTGTGGTCGACATGAGACTTTTGAACACCAGGCGTCAAGTTCAA ACTGGACCAACTGGAAAAACAATTCTAATGCCAGTGCTTGTTTTACTCCGAATGTTTTTTCTTATGGAATCTATGCCCAGGCAGTCAATCTCACTGGGAA AAATACCATCACCAGATACACATATTCATTATTTTGGGGATTCCAGCAAATCAGTACTCTAGCTGGAAACCAAACACCGAGCTATTTTGTTTGGGAAATC CTCTTTACCATGGCAATAATTGGAATTGGCCTCTTGCTCTTTGCTTTTCTCATAGGAAATATGCAGAACTTTCTTCAGGCTCTCGGTAGGAGGAGGTCAG AAATGTCACTAAGGCGACGTGATGTTGATCAGTGGATGAGACATCGGCGCTTGCCGGTCGAACTAAGAAGGAGAGTGATAGAAGCTGAACGGTATCATTG GGCAGCTACTAGAGGGGTAAATGAAGAAATGCTTTTGGAGAATTTGCCTGAGGACCTCCAGAGGGATATAAGAAGACACCTCTTCAAATTTGTCAAGAAA GTATGGATTTTTCACCTGATGGATGAACATGTCTTGGATGCGGTTTGTGAGAAATTAAAACAGAAAATATACATCAAGGGAAGTGCAATTTTTTATGTTG GTGGTCTGGTTGAGAAGATGGTTTTTATTGTGCGTGGAAAAGTGGAAAGCATCGGACATGATGGGACGGTGGTAGCCTTATCTGAAGGGAATGTTTGTGG TGAGGAACTTCTCACATGGTTTCTTGAGCATAGTTCAGTGTCCAAAGATGGAAGGAAAATCAAGATTTCTGGACAGCGTTTGATTAGCAGCAGGACAGTA AGATGCTTAACAAATGTAGAAGCATTTTCACTCAGTGCCGCAGACCTTGAACAAGTCACCAGCCTTTTTGCAAGAAACCTGCGGAATCCGCTTGTCCAAG GAGCCATAAGGTATCAATCTCCCTACTGGAGAGCCCTTGCTGCTACCCGCATTCAAGTTGCTTGGAGATATCGGCAGAAGCGACTAAAGCATAGCAAGAC CACTCACTCAAATCATTTTGCCCCTCACTCAAATCATTCTTCGTTCTCAAGGATTTAG
AA sequence Show only first row Show all	>Potri.015G034000.4 pacid=42776286 polypeptide=Potri.015G034000.4.p locus=Potri.015G034000 ID=Potri.015G034000.4.v4.1 annot-version=v4.1 MANHDKDDIPMLSDTHPKSVDENVDSRFRPFLSRTQSASTSIPLDSMESYGSETNLVGFTGPLRSARKAPLVQMSGPLYINRNTENLFLANHGVTARKKV EPKPEKYPSLNGMDKNDWDDKYTATNAHLMRSGQLGMCNDPYCTTCPSYYHSRASQQRHAKTSSIFDSKFHSVLYGDAKGWARRFNNAINSYIPGVMNPH AKVVQKWNKFFVISCLVAIFVDPLFFILLSVKQDEKCIVIDWGMTKAVVSFRCLTDAIYLLNIFLQFRLAYVAPESRVVGAGELVDHPKKIAMHYLRGCF FIDLFVVLPLPQIIVLALLPKGLDSSGANYAKNLLRAVILVQYIPRLFRFIPLLIGQSPNGFIFETASANFFINLFTFVLSGHIIGSCWYLFGLQRVNQC LRDACHDTSYQHECKKFIDCGRHETFEHQASSSNWTNWKNNSNASACFTPNVFSYGIYAQAVNLTGKNTITRYTYSLFWGFQQISTLAGNQTPSYFVWEI LFTMAIIGIGLLLFAFLIGNMQNFLQALGRRRSEMSLRRRDVDQWMRHRRLPVELRRRVIEAERYHWAATRGVNEEMLLENLPEDLQRDIRRHLFKFVKK VWIFHLMDEHVLDAVCEKLKQKIYIKGSAIFYVGGLVEKMVFIVRGKVESIGHDGTVVALSEGNVCGEELLTWFLEHSSVSKDGRKIKISGQRLISSRTV RCLTNVEAFSLSAADLEQVTSLFARNLRNPLVQGAIRYQSPYWRALAATRIQVAWRYRQKRLKHSKTTHSNHFAPHSNHSSFSRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.015G034000 [exp]	0	1	ATCNGC19.5
AT5G39450			F-box family protein (.1)		Potri.005G067300 [exp]	4.00	0.8916
AT2G23450			Protein kinase superfamily pro...		Potri.007G034500 [exp]	4.47	0.8637
AT2G19130			S-locus lectin protein kinase ...		Potri.013G121000 [exp]	5.65	0.8653
AT5G57580			Calmodulin-binding protein (.1...		Potri.004G035100 [exp]	6.48	0.8795
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.014G102000 [exp]	6.92	0.8535
AT5G38240			Protein kinase family protein ...		Potri.015G018050 [exp]	8.60	0.8918
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Potri.010G212700 [exp]	10.95	0.8442
AT1G06650			2-oxoglutarate (2OG) and Fe(II...		Potri.011G156200 [exp]	11.40	0.8585
AT2G24360			Protein kinase superfamily pro...		Potri.006G279900 [exp]	15.29	0.8643
AT5G15730		CRLK2, AtCRLK2	calcium/calmodulin-regulated r...		Potri.017G101400 [exp]	15.49	0.7958

Compare expression of checked genes

Potri.015G034000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.