Plant FIBer expression Database

Potri.015G034182 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.015G034182.1 pacid=42775562 polypeptide=Potri.015G034182.1.p locus=Potri.015G034182 ID=Potri.015G034182.1.v4.1 annot-version=v4.1
ATGGCTCCTGGCAGCGGTGACCCACGAACATTCAACAAATTGCCATTGCTGCGCCTTGCTGTGTCTCTCTATATATTTTCTTCTTTAGTGCCATACTTTC
ATCACTCCTTGCATCTGTATGAATTCGAGATAGAGAGAAAAATGAAGTTATTGGCGTTTCTTTTATGCTTGTGCTGCTTAATTTTCTTTTTCCAATCATC
CACACAAGCCAGAGCTCCGCCGCTTCCACCGACACCTGGGCGATTACAGCCACCTGCACCGCGGCCCCCGCCACCCGAGGGTCGTTTCAACGATCAGCCC
AGACGTTCCCCGCCACCTCCTGGCGCACCTCCTGGAGGTCGTCCATGA
AA sequence
>Potri.015G034182.1 pacid=42775562 polypeptide=Potri.015G034182.1.p locus=Potri.015G034182 ID=Potri.015G034182.1.v4.1 annot-version=v4.1
MAPGSGDPRTFNKLPLLRLAVSLYIFSSLVPYFHHSLHLYEFEIERKMKLLAFLLCLCCLIFFFQSSTQARAPPLPPTPGRLQPPAPRPPPPEGRFNDQP
RRSPPPPGAPPGGRP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.015G034182
[exp]
0 1
AT1G16260 Wall-associated kinase family ... Potri.003G185700
[exp]
4.89 0.9865
AT1G76980 unknown protein Potri.007G104500
[exp]
6.00 0.9811
AT1G13260 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING ... Potri.015G015800
[exp]
11.61 0.9780
AT5G48380 BIR1 BAK1-interacting receptor-like... Potri.017G004400
[exp]
12.24 0.9849
AT1G28710 Nucleotide-diphospho-sugar tra... Potri.012G112600
[exp]
14.96 0.9809
AT1G14870 AtPCR2, PCR2 PLANT CADMIUM RESISTANCE 2 (.1... Potri.010G109100
[exp]
16.79 0.9603
AT1G21270 WAK2 wall-associated kinase 2 (.1) Potri.004G192100
[exp]
16.91 0.9783
AT1G16260 Wall-associated kinase family ... Potri.001G038525
[exp]
20.97 0.9806
AT4G20800 FAD-binding Berberine family p... Potri.011G155900
[exp]
21.44 0.9569
AT5G43540 C2H2ZnF C2H2 and C2HC zinc fingers sup... Potri.010G074400
[exp]
21.70 0.9469

Potri.015G034182 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.