Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10170 1363 / 0 ATNFXL1 NF-X-like 1 (.1) AT5G05660 259 / 1e-72 EBI, ATNFXL2 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G043700 [exp] 1772 / 0 AT1G10170 1378 / 0.0 NF-X-like 1 (.1) Potri.010G188700 [exp] 258 / 3e-72 AT5G05660 1038 / 0.0 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1) Potri.008G068500 [exp] 64 / 2e-10 AT5G05660 171 / 2e-48 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025071 [exp] 1475 / 0 AT1G10170 1365 / 0.0 NF-X-like 1 (.1) Lus10034470 [exp] 1464 / 0 AT1G10170 1345 / 0.0 NF-X-like 1 (.1) Lus10028286 [exp] 232 / 4e-63 AT5G05660 1131 / 0.0 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1) Lus10040200 [exp] 197 / 6e-52 AT5G05660 1064 / 0.0 NFX1-like 2, EARLY BIRD, Arabidopsis NF-X like 2, sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01422 [poplar] [flax] zf-NF-X1 NF-X1 type zinc finger
Representative CDS sequence Show only first row Show all	>Potri.015G034500.5 pacid=42775508 polypeptide=Potri.015G034500.5.p locus=Potri.015G034500 ID=Potri.015G034500.5.v4.1 annot-version=v4.1 ATGAGCTTTCAACCCCGAAATGATCGAAGAGACAACAACAACAACAGGTCGTCTAGATTTCCCACCCAGAAGTGGGTTCCGAGAGGAGCTAATTCTAGTC CTGCGGTTGATGCAAACACCAAACCGCCTTCGAGTTCCAACTCTAGATGCAATGGAAATGGTGGGGGTGGTGCTGCTCATGGGTGGTCAGGAACAGCACA TCATAGGTATAATAAAGGTGGTATGGCTGTGAATGCACCTAGAGGTCTTGTGGGTCGGCCTAGGAAGGGGATAGAGAGGAGTGAGAAGACTCGGGAATTG AATGACCCGAATTTGCCGCAGCTTGCACAAGATATTCAGGAGAAGCTTGTGAAGAGTACGGTTGAGTGTATGATTTGTTATGATATGGTTCGGAGGTCTG TGCCTATTTGGTCTTGTTCGAGTTGTTTCTCGATTTTTCATTTGAATTGTATCAAGAAATGGGCTCGTGCCCCGACTTCTGTTGATTTGATTGCGGAGAA GAATCAAGGTTTTAATTGGCGGTGTCCGGGATGTCAATCTGTGCAGCTTACGACGTTGAATGATATTCGGTATGTTTGCTTTTGTGGGAAGAGGAGGGAT CCACCTTCGGATTTGTATTTGACTCCTCATTCGTGTGGAGAACCTTGTGGAAAGCCACTTGAGAAGGAGGCTCCTGGTGCTGATGGGAGTAAGGAGGATC TTTGCCCTCATAATTGTGTCTTGCAGTGTCACCCTGGGCCATGTCCTCCTTGCAAGGCCTTTGCTCCACCACGCCTGTGTCCTTGTGGGAAGAAAATAAT CACAACAAGATGTGCTGATCGGATGTCTGTTGTTACCTGTGGACACCCATGTGATAAGCTTCTTGAATGTTGGCGTCATCGATGTGAGCGGATTTGCCAT GTTGGTCCCTGCGATTCTTGTCAGGTGTTGGTCAATGCTTCATGTTTCTGCAAGAAAAAGACGGAGGTTGTTCTGTGTGGTGACATGGCAGTGAAGGGAG AAGTGAAAGCTGAAGATGGTGTTTTTTCTTGCAATTCTACATGTGGAAAGATGCTGGGTTGTGGAAACCATATGTGTGATGAAACTTGTCATCCAGGTCT TTGTGGCGATTGTGAGTTAATGCCTGCCAGGGTCAGGTCTTGCTATTGTGGAAAAACAAGTTTGCAGGAGGAAAGAAAGAGTTGTTTGGATCCAATTCCA ACATGTACACAAATATGCGGCAAATCACTTCCTTGCGGGATGCACCAATGTAAAGGGGTGTGCCATTCTGGGGATTGCGCACCTTGTTTGGTTTCTGTAA CCCAAAAATGCCGTTGTGGATCAACCTCTCAAATTGTGGAGTGTTACAAAATTACTTCAGAGAATGAAAAATTCTTGTGTGAGAAGCCTTGTGGTCGAAA GAAGAACTGTGGAAGGCACAGGTGTAGCGAGCGATGCTGCCCTCTTTCCAACATTAACAATCAGTTCTCTGGTGATTGGGATCCGCACTTTTGTCAAATG GCCTGTGGGAAGAAGTTAAGGTGTGGACAGCATTCTTGTGATGATCTTTGTCACAGTGGCCATTGTCCTCCTTGTCTTGAAACAATTTTCACTGATTTGA CATGTGCGTGTAGGAGAACTTCCATCCCTCCTCCATTGCCTTGTGGTACACCTCCCCCTTCATGTCAGCTCCCATGCTCAGTCCCTCAGCCTTGTGGCCA TCCAGCTTCTCATAGCTGTCACTTCGGAGACTGCCCATCTTGTTTGGTGCCTGTAGCTAAGGAGTGTGTTGGTGGGCATGTGATTCTCGGGAACATACCC TGTGGGTCAAGGGATATCAGATGCAACAAACTATGTGGTAAGACAAGGCAATGTGGTCTGCATGCATGTGGAAGAACTTGTCATTCACTGCCTTGTGATA CCTCATCTGGAAACGAAACTGGCACGAGAGCTTCTTGTGGGCAGACATGTGGTGCCCCTAAGAGAGATTGCAGGCATACTTGCACTGCACTTTGTCATCC TCATGCTCCTTGTCCTGATGTCAGATGTGAGTTCCTTGTCACAATTAGTTGCTCTTGTGGCAGGATGACAGCATCTGTTCCTTGTGATGCTGGGGGGAGC AATGGTGCTTATAATGACACTGTTTTAGAAGCTTCCATTCTCCACAAGTTGCCAGCATCTCTTCAACCAGTGGAATCAACTGGAAAGAAGATTCCTCTTG GCCAAAGAAAGCTTATGTGTGATGATGAATGTGCCAAGTTGGAGAGGAAAAGGGTTCTTGCTGATGCTTTTGATATCACCCCTCCTAATCTGGAAGCTCT TCATTTTGGTGAGAATTCTGCAGTGACAGAGTTGATTGGTGATCTGTACAGGCGTGATCCAAAGTGGGTGCTTGCTGTGGAGGAAAGGTGCAAATATTTG GTTCTTGGCAAGAGCAGAGGAACCACTAGTGGTCTTAAGATTCATGTTTTTTGCCCTATGCTGAAGGATAAAAGGGATGCAGTTAGTCTGATTGCTGAGA GGTGGAAGCTTGCAATTTATTCTGCTGGTTGGGAACCAAAGCGTTTTTTTGTAGTTCATGCTACATCCAAATCCAAACCTCCACCTCGTGTGATTGGGAT TAAGGGTACGACAACTTTAAGTTCCCATCCACCAGTTTTTGATGTTCTTGTAGACATGGATCCCAGGCTTGTTGTATCTTTTCTAGATTTGCCGAGGGAG GCAGATATAAGTTCACTGGTCCTTAGGTTTGGTGGGGAATGTGAATTAGTTTGGTTGAATGATAAGAATGCACTGGCTGTATTCAATGATCCTGCTCGAG CAGCTACTGCTATGAGAAGGCTGGATCATGGATCATTATATCATGGAGCATCTGTGGTTCCTCAAAATACTGGTGCATCTGTGGCATCACCAGCTAATAA TGCCTGGGCAGTGGCAGGGACTGCAATGGAAGGAACAGTTGCAGCTTTGAAGGGAACTTCGTGGAAGAAAGCTGTAGTGCAGGAGACTGGTTGTAAGAAA TATTCATGGAGTGGTGAAGAGTGGTCTGATGGTGGTTCTGCAGATGTTCAGGCTTCTGCATGGAAAGGGAAAGAAGCTCCAATTGTGGCTTCGATTAACC GATGGAGTGTCCTAGACTCTGAGAAGGCTGACAGTTCATCTGCTGCCTCTGTCAAGATGGAAGATCCCGCAAAACAAGTTGCAGGAAGCCTTTCCAGTTC AGGTTTGGAATCAAATGCAAGCACTTCCAGTGCATCAAGGCAGCCTGCAATGCAATCTGGAGGAGTTTCAAGAGAAGAAGATTTATCTGTGGTGGTGGAT GATTGGGAGAAGGCTTATGATTGA
AA sequence Show only first row Show all	>Potri.015G034500.5 pacid=42775508 polypeptide=Potri.015G034500.5.p locus=Potri.015G034500 ID=Potri.015G034500.5.v4.1 annot-version=v4.1 MSFQPRNDRRDNNNNRSSRFPTQKWVPRGANSSPAVDANTKPPSSSNSRCNGNGGGGAAHGWSGTAHHRYNKGGMAVNAPRGLVGRPRKGIERSEKTREL NDPNLPQLAQDIQEKLVKSTVECMICYDMVRRSVPIWSCSSCFSIFHLNCIKKWARAPTSVDLIAEKNQGFNWRCPGCQSVQLTTLNDIRYVCFCGKRRD PPSDLYLTPHSCGEPCGKPLEKEAPGADGSKEDLCPHNCVLQCHPGPCPPCKAFAPPRLCPCGKKIITTRCADRMSVVTCGHPCDKLLECWRHRCERICH VGPCDSCQVLVNASCFCKKKTEVVLCGDMAVKGEVKAEDGVFSCNSTCGKMLGCGNHMCDETCHPGLCGDCELMPARVRSCYCGKTSLQEERKSCLDPIP TCTQICGKSLPCGMHQCKGVCHSGDCAPCLVSVTQKCRCGSTSQIVECYKITSENEKFLCEKPCGRKKNCGRHRCSERCCPLSNINNQFSGDWDPHFCQM ACGKKLRCGQHSCDDLCHSGHCPPCLETIFTDLTCACRRTSIPPPLPCGTPPPSCQLPCSVPQPCGHPASHSCHFGDCPSCLVPVAKECVGGHVILGNIP CGSRDIRCNKLCGKTRQCGLHACGRTCHSLPCDTSSGNETGTRASCGQTCGAPKRDCRHTCTALCHPHAPCPDVRCEFLVTISCSCGRMTASVPCDAGGS NGAYNDTVLEASILHKLPASLQPVESTGKKIPLGQRKLMCDDECAKLERKRVLADAFDITPPNLEALHFGENSAVTELIGDLYRRDPKWVLAVEERCKYL VLGKSRGTTSGLKIHVFCPMLKDKRDAVSLIAERWKLAIYSAGWEPKRFFVVHATSKSKPPPRVIGIKGTTTLSSHPPVFDVLVDMDPRLVVSFLDLPRE ADISSLVLRFGGECELVWLNDKNALAVFNDPARAATAMRRLDHGSLYHGASVVPQNTGASVASPANNAWAVAGTAMEGTVAALKGTSWKKAVVQETGCKK YSWSGEEWSDGGSADVQASAWKGKEAPIVASINRWSVLDSEKADSSSAASVKMEDPAKQVAGSLSSSGLESNASTSSASRQPAMQSGGVSREEDLSVVVD DWEKAYD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10170		ATNFXL1	NF-X-like 1 (.1)		Potri.015G034500 [exp]	0	1
AT5G19630			alpha/beta-Hydrolases superfam...		Potri.006G191700 [exp]	3.46	0.7984
AT2G04845			Acyl-CoA N-acyltransferases (N...		Potri.014G161800 [exp]	10.72	0.7832
AT1G30570		HERK2	hercules receptor kinase 2 (.1...		Potri.001G467000 [exp]	13.26	0.7763
					Potri.008G119000 [exp]	16.43	0.7663
					Potri.004G011300 [exp]	21.26	0.7847
AT3G23150		ETR2	ethylene response 2, Signal tr...		Potri.008G164400 [exp]	25.37	0.7361	ETR2.2
AT2G12550		NUB1	homolog of human NUB1, ubiquit...		Potri.018G118143 [exp]	25.92	0.7310
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.004G176000 [exp]	31.46	0.7098
AT1G16220			Protein phosphatase 2C family ...		Potri.001G473300 [exp]	38.72	0.7816
AT5G04460			RING/U-box superfamily protein...		Potri.010G231100 [exp]	43.48	0.7131

Compare expression of checked genes

Potri.015G034500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.