Plant FIBer expression Database

Potri.015G034800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67920 48 / 4e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G044001
[exp]
130 / 2e-41 AT1G67920 44 / 2e-07 unknown protein
Potri.008G134100
[exp]
50 / 8e-10 AT1G67920 68 / 8e-17 unknown protein
Potri.010G107200
[exp]
47 / 1e-08 AT1G67920 62 / 1e-14 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.015G034800.1 pacid=42775622 polypeptide=Potri.015G034800.1.p locus=Potri.015G034800 ID=Potri.015G034800.1.v4.1 annot-version=v4.1
ATGGAGCATAGAAGAGGAGACAGCGACAACAAGGAAGATGGGATTGAGGAGGAGCAGATGGGATTTCCAGTTCATAATCAAGTTAAGAAGATAAAGCAAG
AATCTTGCTACAAAATCTTGGATTGGCCACCAGGGGGGCTGCCTGAGATGAAACCTGTTCTTAAGGAGATCGCCACCAGATCATCACATCAACTCTCTCG
TTCGCCTCTGGGATTAGCTGGCAGACCCATCTCTGTTGGTGATTCATAG
AA sequence
>Potri.015G034800.1 pacid=42775622 polypeptide=Potri.015G034800.1.p locus=Potri.015G034800 ID=Potri.015G034800.1.v4.1 annot-version=v4.1
MEHRRGDSDNKEDGIEEEQMGFPVHNQVKKIKQESCYKILDWPPGGLPEMKPVLKEIATRSSHQLSRSPLGLAGRPISVGDS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G67920 unknown protein Potri.015G034800
[exp]
0 1
AT2G38640 Protein of unknown function (D... Potri.016G143000
[exp]
18.70 0.6799
AT4G02090 unknown protein Potri.002G196900
[exp]
20.19 0.6089
AT1G10200 LIM WLIM1, SF3 WLIM1, GATA type zinc finger t... Potri.015G072400
[exp]
33.04 0.6434
Potri.003G152800
[exp]
36.37 0.6743
AT2G23690 unknown protein Potri.009G110600
[exp]
48.74 0.6458
AT5G47530 Auxin-responsive family protei... Potri.006G015000
[exp]
66.38 0.6064
AT1G78020 Protein of unknown function (D... Potri.007G089200
[exp]
85.69 0.5782
AT5G58380 PKS2, CIPK10, S... SNF1-RELATED PROTEIN KINASE 3.... Potri.019G127500
[exp]
95.43 0.5780 Pt-CIPK2.1
AT5G14400 CYP724A1 "cytochrome P450, family 724, ... Potri.001G341000
[exp]
235.96 0.5603
Potri.002G148550
[exp]
239.09 0.5612

Potri.015G034800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.