Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21065 371 / 1e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G02980 344 / 4e-112 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59200 341 / 1e-111 OTP80 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G08305 340 / 3e-111 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G59720 340 / 4e-110 CRR28 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 338 / 2e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G15300 333 / 3e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G36730 328 / 3e-107 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G42920 330 / 6e-107 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G20540 328 / 9e-107 MEF21 mitochondrial editing factor 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G001000 [exp] 385 / 8e-128 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G135400 [exp] 372 / 1e-122 AT1G31920 738 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G168800 [exp] 370 / 3e-122 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G083900 [exp] 354 / 2e-117 AT2G36730 552 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G202600 [exp] 355 / 3e-117 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.016G065500 [exp] 348 / 2e-113 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G223900 [exp] 336 / 1e-109 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G237000 [exp] 335 / 1e-108 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G035900 [exp] 332 / 3e-108 AT2G20540 709 / 0.0 mitochondrial editing factor 21 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013319 [exp] 367 / 6e-121 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10005207 [exp] 362 / 2e-118 AT4G21065 741 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10014298 [exp] 348 / 4e-113 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023592 [exp] 346 / 3e-112 AT1G74630 840 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 344 / 1e-111 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002024 [exp] 339 / 2e-111 AT5G56310 344 / 6e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029344 [exp] 337 / 5e-109 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007341 [exp] 332 / 4e-108 AT2G42920 610 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10029436 [exp] 317 / 2e-100 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024971 [exp] 315 / 2e-100 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.015G034900.2 pacid=42775030 polypeptide=Potri.015G034900.2.p locus=Potri.015G034900 ID=Potri.015G034900.2.v4.1 annot-version=v4.1 ATGATCATTAACTACCTTTGCCGCTTAAAATCGAACTTGAAGGCCCTGCAATTGGGTTCCTTTCGTTCACGTATTTCAACCATAAATACTGTTTCCATAT CAAAGGAAGAAACTGTCATATCCTTTTTGAAGAACTGCTCTTGTATGAAAGATTTGAAGCAAATTCATGCCCGTGTAATCCAACTTGGCTTTGAGCAGAA CCGTTTTGTTGTAGGCAAGGTCATTGTGTTTTGTGCTGCTGCAGAGCATGGAGATATGAACTATGCTGTTTCAGTTTTTGAAAAGATTGGTGACCCGGAT GCTTTTATTTTTAATACGATGATTAGGGGTTTTGGCAAGGCTAATGACCCTCGAAAAGCTTTTGATTACTATAAAAGGATGCAAGAGAGAGGTTTAGTGT CAGACAGCTTCACTTTCTCATTCTTGCTTAAGGTTTGTGGCCAGTTAGGGTTGGTTTTGTTGGGGAGACTAATGCATTGCAGTACATTGAAACGTGGGCT TAATTCACATGTCTTTGTTAGGAACACTCTTGTTCATATGTATGGCACGTTTAAGGATATAGAAGCATCCCGCCAACTGTTTGAAGAAATTCCCAACCCA GAATTAGTGGCATGGAATATTATAATTGATTGCCATGTCTCTTGTGGTAAGTTCAATGAAGCACTTGAAATGTTCTCAAGGATGTTGAAATTCGGCATAG AGCCTGACGAGGCCACATTCGTTGTGATCCTCTCCGCATGTTCTGCATTGGGTGCGTTAGATTTTGGGAGATGGGTTCATTCTTGTATTAGCAATATTGG TCATGGGTGTATTACAGAGGTTAATAATTCACTCCTTGATATGTATGCGAAGTGTGGAGCACTTCAAGAAGCGTTTGAGATATTCAATGGGATGAACAAG AAGAATACAGTAACATGGAATACGATGATTTTGGGACTAGCAAGTCATGGCTATGCAAATGAGGCATTGGCTCTCTTTTCCAATATGCTAGAACAAAAGC TCTGGGCACCAGATGATATTACTTTCTTGGTGGTTTTGTCTGCTTGCAGCCATGGAGGGATGGTTGATAAAGGATGGAGATTTTTTGATATTATGAAGAA AGAGTACCATATCCAACCAACAATAAAGCACTATGGGTGCATGGTGGATATTTTGGGTCGAGCTGGTTTCGTTGAGGAGGCTTATCGATTAATAAGTAAT ATGCCAATGCAGTGCAATGCCATTGTGTGGAGAACATTGTTGGCTGCTTGTAGGTTGCACGGAAATGTTGAACTTGGGAAGCAGGTTAGGAAACAGCTTT TGGAATTGGAACCAGATCACAGCAGTGACTATGTTCTTCTTGCAAACACGTATGCAAGTGCAGGACGGTGGAATGAAGCTATGAGAGTGAGAAAAACAAT GCACAAGAGGGGAGTTCAGAAACCTGAACCTGGTAATAGCGTTGTGGGCAGGCATCCCAGTTTGAGGTCAGATGAGCCTCTCTTAAGTTTCTTGTGA
AA sequence Show only first row Show all	>Potri.015G034900.2 pacid=42775030 polypeptide=Potri.015G034900.2.p locus=Potri.015G034900 ID=Potri.015G034900.2.v4.1 annot-version=v4.1 MIINYLCRLKSNLKALQLGSFRSRISTINTVSISKEETVISFLKNCSCMKDLKQIHARVIQLGFEQNRFVVGKVIVFCAAAEHGDMNYAVSVFEKIGDPD AFIFNTMIRGFGKANDPRKAFDYYKRMQERGLVSDSFTFSFLLKVCGQLGLVLLGRLMHCSTLKRGLNSHVFVRNTLVHMYGTFKDIEASRQLFEEIPNP ELVAWNIIIDCHVSCGKFNEALEMFSRMLKFGIEPDEATFVVILSACSALGALDFGRWVHSCISNIGHGCITEVNNSLLDMYAKCGALQEAFEIFNGMNK KNTVTWNTMILGLASHGYANEALALFSNMLEQKLWAPDDITFLVVLSACSHGGMVDKGWRFFDIMKKEYHIQPTIKHYGCMVDILGRAGFVEEAYRLISN MPMQCNAIVWRTLLAACRLHGNVELGKQVRKQLLELEPDHSSDYVLLANTYASAGRWNEAMRVRKTMHKRGVQKPEPGNSVVGRHPSLRSDEPLLSFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21065			Tetratricopeptide repeat (TPR)...		Potri.015G034900 [exp]	0	1
AT5G06810			Mitochondrial transcription te...		Potri.016G048300 [exp]	1.00	0.8396
AT2G41620			Nucleoporin interacting compon...		Potri.012G034800 [exp]	2.00	0.7970
AT4G21065			Tetratricopeptide repeat (TPR)...		Potri.006G252400 [exp]	9.64	0.7918
					Potri.017G112500 [exp]	25.61	0.6493
AT3G58590			Pentatricopeptide repeat (PPR)...		Potri.019G091000 [exp]	28.70	0.7742
AT3G09360			Cyclin/Brf1-like TBP-binding p...		Potri.001G246100 [exp]	33.16	0.7691
AT1G04900			Protein of unknown function (D...		Potri.001G314700 [exp]	33.67	0.6650
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Potri.016G095900 [exp]	42.05	0.6943
AT1G18485			Pentatricopeptide repeat (PPR)...		Potri.009G067000 [exp]	42.33	0.7560
AT1G56690			Pentatricopeptide repeat (PPR)...		Potri.013G005400 [exp]	45.60	0.7523

Compare expression of checked genes

Potri.015G034900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.