Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18300 195 / 2e-62 ATNUDT4 nudix hydrolase homolog 4 (.1) AT1G73540 166 / 3e-51 ATNUDT21 nudix hydrolase homolog 21 (.1) AT1G14860 160 / 5e-49 ATNUDT18 nudix hydrolase homolog 18 (.1) AT2G01670 156 / 2e-47 ATNUDT17 nudix hydrolase homolog 17 (.1) AT3G12600 124 / 6e-35 ATNUDT16 nudix hydrolase homolog 16 (.1.2) AT1G12880 124 / 6e-35 ATNUDT12 nudix hydrolase homolog 12 (.1) AT3G26690 121 / 8e-34 ATNUDX13, ATNUDT13 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13, nudix hydrolase homolog 13 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G044300 [exp] 274 / 2e-93 AT1G18300 199 / 5e-65 nudix hydrolase homolog 4 (.1) Potri.017G131000 [exp] 164 / 1e-50 AT2G01670 223 / 6e-75 nudix hydrolase homolog 17 (.1) Potri.004G085600 [exp] 160 / 6e-49 AT1G14860 206 / 2e-68 nudix hydrolase homolog 18 (.1) Potri.010G107300 [exp] 158 / 2e-48 AT2G01670 223 / 2e-75 nudix hydrolase homolog 17 (.1) Potri.008G134000 [exp] 156 / 1e-47 AT2G01670 218 / 3e-73 nudix hydrolase homolog 17 (.1) Potri.003G194900 [exp] 126 / 7e-36 AT3G12600 226 / 2e-76 nudix hydrolase homolog 16 (.1.2) Potri.001G029500 [exp] 120 / 1e-33 AT3G12600 219 / 5e-74 nudix hydrolase homolog 16 (.1.2) Potri.001G069200 [exp] 108 / 2e-29 AT1G12880 219 / 2e-73 nudix hydrolase homolog 12 (.1) Potri.003G161100 [exp] 103 / 1e-26 AT1G12880 213 / 4e-70 nudix hydrolase homolog 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034598 [exp] 168 / 4e-52 AT1G14860 248 / 5e-85 nudix hydrolase homolog 18 (.1) Lus10021780 [exp] 166 / 3e-51 AT1G14860 244 / 2e-83 nudix hydrolase homolog 18 (.1) Lus10001598 [exp] 165 / 1e-50 AT1G14860 252 / 1e-86 nudix hydrolase homolog 18 (.1) Lus10003713 [exp] 136 / 2e-39 AT1G14860 213 / 8e-71 nudix hydrolase homolog 18 (.1) Lus10008660 [exp] 132 / 7e-38 AT3G12600 221 / 6e-74 nudix hydrolase homolog 16 (.1.2) Lus10026164 [exp] 131 / 1e-37 AT3G12600 221 / 1e-74 nudix hydrolase homolog 16 (.1.2) Lus10024137 [exp] 114 / 3e-31 AT3G12600 211 / 1e-70 nudix hydrolase homolog 16 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [poplar] [flax] NUDIX PF00293 [poplar] [flax] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Potri.015G035000.1 pacid=42776367 polypeptide=Potri.015G035000.1.p locus=Potri.015G035000 ID=Potri.015G035000.1.v4.1 annot-version=v4.1 ATGCTCTCTGTTTCCTACAACAGTAAGTCCTTCTCTAATTTTAGCAAAACCCTTTCGAGAGAAGTAAAAATCCCAATTTTTAGTTTTCGAAAAAAGAAAG AAGAAAGAACCAAATTTGGTGTATATAATTTAAGGGAACTGCAAACAGAACAAACCCTCGCCAGAATTCTTGTATTGAATCTCTTGTGTAAGAGAAACAT GAGGAACCTATCTTTCTACCTCACGAACTTGACAAATTTCCTCAACTTTCTTTTCCCTTTCCTTATAAAAATCCCATCAAAATCTTTGCCTGTGCAAATT GAGACTATGGTTTCTCTGGTTTCTCGTACTGGAAGAAATCTACAGCGGTATGAGAAAGGCTGTCGCCTTGTTGTAGGGTGCATTCCATATAGATACAAGA AAAGCCAAGAACCAACTTCGGTTGAAGAATTAGAAGTTCTTGTCATTAGTGCACAGAATGGTCAAGGAATGTTGTTCCCAAAGGGAGGATGGGAAAATGA TGAGTCTATGGAAGAGGCTGCGATGCGAGAGACAGAAGAGGAAGCAGGAGTGATTGGTGTTGTTGGGGGTAAACTAGGCCCGTGGCAGTATAAGAGCAAA AGGAGTAGCATAATGCATGAGAGCTACATGTTTCCTTTACTTGTTCAAGAAGAATTAGATAGTTGGCCCGAGAGCAAAATCCGAAAAAGAAGATGGGTTT CTATTAATGAAGCTAGAGAAGTATGCCATAATTGGTGGATGCGAGATGCTTTAGAAGAATTGGTTAGGCGACGAAGACTAAATCCCCAAGCACAGAGTTA G
AA sequence Show only first row Show all	>Potri.015G035000.1 pacid=42776367 polypeptide=Potri.015G035000.1.p locus=Potri.015G035000 ID=Potri.015G035000.1.v4.1 annot-version=v4.1 MLSVSYNSKSFSNFSKTLSREVKIPIFSFRKKKEERTKFGVYNLRELQTEQTLARILVLNLLCKRNMRNLSFYLTNLTNFLNFLFPFLIKIPSKSLPVQI ETMVSLVSRTGRNLQRYEKGCRLVVGCIPYRYKKSQEPTSVEELEVLVISAQNGQGMLFPKGGWENDESMEEAAMRETEEEAGVIGVVGGKLGPWQYKSK RSSIMHESYMFPLLVQEELDSWPESKIRKRRWVSINEAREVCHNWWMRDALEELVRRRRLNPQAQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18300		ATNUDT4	nudix hydrolase homolog 4 (.1)		Potri.015G035000 [exp]	0	1
AT5G63130			Octicosapeptide/Phox/Bem1p fam...		Potri.012G085000 [exp]	1.73	0.7909
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.019G128100 [exp]	4.47	0.7501	PKS5.2
AT5G10980			Histone superfamily protein (....		Potri.005G072300 [exp]	7.48	0.7695
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Potri.016G088300 [exp]	8.94	0.6949
AT1G16670			Protein kinase superfamily pro...		Potri.006G128500 [exp]	12.84	0.7623
AT2G40330		RCAR9, PYL6	regulatory components of ABA r...		Potri.010G183900 [exp]	18.76	0.7305
AT1G75180			Erythronate-4-phosphate dehydr...		Potri.002G260900 [exp]	21.42	0.6920
AT5G59550			zinc finger (C3HC4-type RING f...		Potri.008G058100 [exp]	23.74	0.6253	Pt-RHC2.2
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Potri.016G125400 [exp]	30.29	0.7309
AT1G04770			Tetratricopeptide repeat (TPR)...		Potri.001G050600 [exp]	30.98	0.6957

Compare expression of checked genes

Potri.015G035000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.