Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17830 504 / 4e-175 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G80030 379 / 2e-126 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT4G39960 317 / 8e-103 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G22360 311 / 7e-101 DNAJ heat shock family protein (.1) AT5G48030 190 / 2e-54 GFA2 gametophytic factor 2 (.1) AT1G28210 175 / 4e-49 ATJ1 DNAJ heat shock family protein (.1.2) AT3G44110 122 / 3e-30 ATJ3 DNAJ homologue 3 (.1.2) AT5G22060 120 / 2e-29 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT4G28480 85 / 6e-18 DNAJ heat shock family protein (.1.2) AT3G08910 84 / 1e-17 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G031800 [exp] 385 / 6e-129 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.005G073900 [exp] 308 / 2e-99 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 305 / 4e-98 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.005G160200 [exp] 187 / 5e-53 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.009G065500 [exp] 186 / 9e-53 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.001G271300 [exp] 182 / 2e-51 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.002G141100 [exp] 139 / 8e-36 AT3G44110 504 / 3e-178 DNAJ homologue 3 (.1.2) Potri.009G015700 [exp] 138 / 1e-35 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.010G243100 [exp] 138 / 1e-35 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031908 [exp] 545 / 0 AT3G17830 457 / 3e-157 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10031336 [exp] 536 / 0 AT3G17830 459 / 5e-158 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10023122 [exp] 384 / 4e-128 AT1G80030 636 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10011484 [exp] 381 / 5e-127 AT1G80030 638 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10023148 [exp] 301 / 6e-97 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1) Lus10000631 [exp] 298 / 2e-95 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10035920 [exp] 276 / 5e-87 AT2G22360 619 / 0.0 DNAJ heat shock family protein (.1) Lus10025742 [exp] 233 / 2e-71 AT2G22360 504 / 4e-179 DNAJ heat shock family protein (.1) Lus10011934 [exp] 176 / 6e-49 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1) Lus10027634 [exp] 174 / 1e-48 AT5G48030 494 / 8e-174 gametophytic factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF00684 [poplar] [flax] DnaJ_CXXCXGXG DnaJ central domain CL0392 [poplar] [flax] PF01556 [poplar] [flax] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Potri.015G035300.1 pacid=42776033 polypeptide=Potri.015G035300.1.p locus=Potri.015G035300 ID=Potri.015G035300.1.v4.1 annot-version=v4.1 ATGCCCGTCATAGTCCAAGCTCCCTCATGCTGCTTTTGGCCTAATCTAAACCCCATTTCGAACCCCGCGATTAGACCCATTCCTGCTAATTCCTTTTCCA TAACCCCTCCTCTTCATTTCTTGAAAACTAACAATTTTCATAGTCCCAATGTCACCTCAGCAAAGGGCCATCGTTTTTTCAACACTGCTTCTGTAAGGGC AGCAGCTTCTGCAAGAGCTGATTATTATTCCACTTTGAATGTCAGTAGAAATGCCACTTTACAAGAAATCAAAAGCTCCTACAGAAAGCTGGCGCGCAAG TATCATCCAGACATGAACAAGGGAGCTGGAGCTGAAGACAAGTTTAAAGAAATAAGTGCTGCCTATGAGGTCCTATCAGATGATGAGAAAAGATCTTTAT ATGATCGCTTTGGTGAGGCAGGTTTGCAAGGAGAATTTGATGGCTCTGGCAGTGGTTCGCAAGAGGTGGATCCTTTTGAAATATACAACACCTTCTTTGG TGGTTCAGATGGGTTTTTTGGTGGAAGGGGTGGAGATGGCGTGCTTAACTTCAATTTCAGAAATATGGGGAACCAGGATCTTGACATTCGGTATGATCTG TATTTGAGCTTGGAAGAATCAGTTTTTGGAGGACAGCGAGAAATTGAAGTTTCTTTTTTTGAGACATGTGATAGCTGCAGTGGTACTGGTGCTAAATCTA GTAGCTGCATAAAATCATGTGCTGATTGTGGAGGTAGAGGAGGGGTGGTGAAAACTCAAAGAACACCATTTGGTATGATGTCTCAGGTTTCTACTTGCGC AAAATGCTCTGGTGAAGGCGAGGTGATTACTGACCACTGCCGAAAATGTGGTGGAAATGGTAAAATAAGGTCAAAGCGAAGCATGAAAGTGGTCTTCCCA GCTGGTGTCAATGATGGAGCTACAATGAGAATTCAGGGCGAGGGTAGTTTCAACAAGAAAAGGGGCATTGCTGGTGATCTGTTTATAAGCCTCCATGTCA ATGAAAAACAAGGGATTTGGAGAAATGGTCTCAATCTTTACTCAAAGATCAATGTTGATTATACTCAGGCAATTCTGGGGACCGTCTTAAAGGTTGAGAC TGTCGAGGGTTTGAAAGATCTTCAAATTCCTTCTGGGATTCAGCCTGGAGATGTTGTAAAATTGTTACGTTTGGGAGTTCCAGACATCAATAAACCTTCT GTTCGAGGTGATCATCACTTTATTGTGAATATTCTGATCCCCAAAGATATCAGTAACAAGGAACGAGTGCTTGTCGAGGAACTGGCTTCACTCAAGTCTT GCAGCAAGGAACATGCAATTTCTTCTAACAGCTCTGGCACATTCGAAAGCAACAACGATCACATTAGAGATCCAAAAGACAATGCTTCAGGTCATAGGGT CAAATCCACTGCGTCTCTGTGGAACTCGATTAAAGGCTTCTTGGGGCAAAAGCAATCACGGGAAAGGTTTGCCTCTGTCACCATGACCAACACATCACTG TTGTGGAGATCTCGCAAACCGGATTTTTCCATCATGTTGTCTGTAATTACAGTTTCAGTTCTAACTTGTGTTTTAACCTCCATGCGAAAGATACAAAGGA ACAATTCCTCGCATATACAGAACATTAGGAAGAAATGA
AA sequence Show only first row Show all	>Potri.015G035300.1 pacid=42776033 polypeptide=Potri.015G035300.1.p locus=Potri.015G035300 ID=Potri.015G035300.1.v4.1 annot-version=v4.1 MPVIVQAPSCCFWPNLNPISNPAIRPIPANSFSITPPLHFLKTNNFHSPNVTSAKGHRFFNTASVRAAASARADYYSTLNVSRNATLQEIKSSYRKLARK YHPDMNKGAGAEDKFKEISAAYEVLSDDEKRSLYDRFGEAGLQGEFDGSGSGSQEVDPFEIYNTFFGGSDGFFGGRGGDGVLNFNFRNMGNQDLDIRYDL YLSLEESVFGGQREIEVSFFETCDSCSGTGAKSSSCIKSCADCGGRGGVVKTQRTPFGMMSQVSTCAKCSGEGEVITDHCRKCGGNGKIRSKRSMKVVFP AGVNDGATMRIQGEGSFNKKRGIAGDLFISLHVNEKQGIWRNGLNLYSKINVDYTQAILGTVLKVETVEGLKDLQIPSGIQPGDVVKLLRLGVPDINKPS VRGDHHFIVNILIPKDISNKERVLVEELASLKSCSKEHAISSNSSGTFESNNDHIRDPKDNASGHRVKSTASLWNSIKGFLGQKQSRERFASVTMTNTSL LWRSRKPDFSIMLSVITVSVLTCVLTSMRKIQRNNSSHIQNIRKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17830			Molecular chaperone Hsp40/DnaJ...		Potri.015G035300 [exp]	0	1
AT5G05680		EMB2789, MOS7	MODIFIER OF SNC1,7, EMBRYO DEF...		Potri.010G189700 [exp]	1.41	0.9104
AT2G44410			RING/U-box superfamily protein...		Potri.009G023300 [exp]	2.44	0.8974
AT2G34400			Pentatricopeptide repeat (PPR-...		Potri.012G108000 [exp]	4.79	0.8483
AT5G50410			unknown protein		Potri.012G097500 [exp]	6.32	0.8632
AT1G80150			Tetratricopeptide repeat (TPR)...		Potri.001G171300 [exp]	6.92	0.8787
AT4G37210			Tetratricopeptide repeat (TPR)...		Potri.005G130800 [exp]	7.00	0.8691
AT2G32170			S-adenosyl-L-methionine-depend...		Potri.016G021900 [exp]	8.12	0.8877
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.009G166932 [exp]	8.12	0.8724
AT5G45190			Cyclin family protein (.1.2)		Potri.005G097400 [exp]	8.66	0.8740
AT3G03305			Calcineurin-like metallo-phosp...		Potri.008G077000 [exp]	8.83	0.8378

Compare expression of checked genes

Potri.015G035300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.