Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48480 731 / 0 RKL1 receptor-like kinase 1 (.1) AT3G17840 718 / 0 RLK902 receptor-like kinase 902 (.1) AT5G16590 615 / 0 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT3G02880 396 / 5e-130 Leucine-rich repeat protein kinase family protein (.1) AT2G26730 376 / 1e-121 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 365 / 2e-117 Leucine-rich repeat protein kinase family protein (.1.2) AT4G23740 350 / 6e-112 Leucine-rich repeat protein kinase family protein (.1) AT3G08680 343 / 2e-109 Leucine-rich repeat protein kinase family protein (.1.2) AT1G68400 337 / 2e-106 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G05160 324 / 5e-102 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G044600 [exp] 981 / 0 AT1G48480 719 / 0.0 receptor-like kinase 1 (.1) Potri.004G086100 [exp] 704 / 0 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.017G130600 [exp] 684 / 0 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.018G074300 [exp] 388 / 2e-126 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 384 / 5e-125 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 380 / 1e-123 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 364 / 1e-116 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 361 / 4e-116 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G095200 [exp] 350 / 3e-112 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017996 [exp] 822 / 0 AT1G48480 772 / 0.0 receptor-like kinase 1 (.1) Lus10031337 [exp] 728 / 0 AT1G48480 771 / 0.0 receptor-like kinase 1 (.1) Lus10031350 [exp] 643 / 0 AT1G48480 625 / 0.0 receptor-like kinase 1 (.1) Lus10002299 [exp] 496 / 3e-173 AT1G48480 433 / 5e-149 receptor-like kinase 1 (.1) Lus10004040 [exp] 492 / 5e-167 AT1G48480 694 / 0.0 receptor-like kinase 1 (.1) Lus10031909 [exp] 469 / 5e-161 AT1G48480 441 / 2e-150 receptor-like kinase 1 (.1) Lus10041992 [exp] 413 / 4e-142 AT3G17840 343 / 2e-115 receptor-like kinase 902 (.1) Lus10010973 [exp] 424 / 1e-140 AT1G48480 621 / 0.0 receptor-like kinase 1 (.1) Lus10017756 [exp] 388 / 2e-126 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035012 [exp] 374 / 8e-121 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.015G035500.1 pacid=42775252 polypeptide=Potri.015G035500.1.p locus=Potri.015G035500 ID=Potri.015G035500.1.v4.1 annot-version=v4.1 ATGGAGACCATAACTCTCCTCCTTTTTCTGTTACTAATCTCTTTACCTCATTCGAAACCAGATCTCTCACCCGACCATTCAGCCCTCCTCAGCCTCCGGT CTGCCGTGCACGGCCGGACACTCCTCTGGAACGTTTCGCTGCAGAGCCCTTGTTCATGGACTGGTGTCAAATGTGAACAAAATCGTGTCACGGTTCTCCG GCTTCCTGGTTTTGCACTCACTGGAGAAATCCCACTTGGAATCTTCTCAAACTTGACACAATTACGCACTTTGAGTCTTAGGCTTAATGCACTTACTGGA AACCTTCCTCAAGATCTTGCTAATTGTAAAAGTCTAAGGAATCTTTATTTACAAGGGAATCTTTTCTCTGGAGAGATTCCTGATTTCCTGTTTAGTTTGA AAGATCTTGTGAGGTTGAACCTTGCTGAGAATAATTTCACCGGTGAGATTTCACCCGGATTTGACAATTTCACGAGGCTGCGGACTTTGTTTTTGGAGGA TAATTTGTTAACCGGGTCATTGCCAGATTTGAAGCTGGAGAAGCTAAAGCAGTTTAATGTAAGTAATAATTTGTTAAATGGGTCTATACCTGATACATTT AAAGGTTTTGGACCTAGTTCTTTTGGGGGTACTTCTTTATGTGGGAAGCCTCTTCCTGATTGTAAAGATAGCGGGGGGGCTATTGTGGTGCCTAGTACAC CAAATGGTGGTGGACAAGGTAAGAGGAAGAAGTTGTCTGGAGGTGCAATTGCAGGTATTGTGATTGGGTCTATAGTGGGGTTACTGTTGATTGTTATGAT TTTGATGTTTTTGTGTAGAAAGAACAGTAGTAATAAGTCAAGATCGATTGACATTGCATCGATTAAACAAGAGATGGAGATTCAAGGGGATAAGCCAATT GTCGAGGCGGAGAATGGTGGAGGGTATGGAAATGGGTATTCTGTGGCCGCGGCGGCGGCGGCTGCAATGGTGGGTAATGGTAAAGGTGGGGACTTGAATA GTGGTGGTGCCAAAAAGTTGGTGTTTTTCGGCAAGGCACCAAGGGTGTTTGATTTAGAAGATTTGTTGAGAGCCTCTGCAGAGGTTTTGGGGAAAGGTAC GTTTGGGACGGCGTACAAGGCAGTTTTGGAGATGGGAACTGTGGTGGCTGTGAAGAGGTTGAGGGATGTGACAATTTCTGAGATAGAATTTAGGGAGAAG ATCGAGACTGTGGGTGCTATGGATCATGAGAATTTGGTCCCATTGAGAGCTTACTATTATAGCAGAGATGAGAAGCTTCTTGTTTATGATTACATGTCAA TGGGAAGCTTGTCTGCACTTTTGCATGGAAACAAGGGAGCTGGTAGGGCTCCATTGAACTGGGAAATCAGGTCTGGCATTGCCCTTGCAGCTGCCCGTGG CATTGAATACCTGCACTCTCAAGGTCCCAACGTATCCCACGGAAACATCAAGTCATCTAATATCCTTCTTACTCAATCATATGATGCCCGGGTATCTGAT TTTGGGCTTGCCCACCTTGTTGGTCCTCCCTCTACTCCTAACCGAGTTGCTGGTTACCGAGCACCTGAGGTAACTGACCCTCGCAAGGTTTCCCAGAAGG CTGATGTATATAGCTTTGGTGTGTTGCTGTTGGAGCTGCTTACCGGGAAGGCCCCCGCCCATGCCCTTTTGAATGAGGAGGGCGTGGACCTTCCCAGATG GGTTCAGTCTATAGTTCGAGAGGAATGGACTTCAGAGGTGTTTGATCTTGAGCTCCTCAGATACCAGAATGTTGAGGAAGAGATGGTTCAGCTCTTGCAG CTTGGAATAGATTGTGCCGCCCAATACCCTGACAACCGCCCATCAATGTCCGCAGTAACAAGGAGGATCGAGGAGCTATGTCGGTCTAGCCTGCGGGAAC ATCACGGCCCACAGCCTGAACCAAGCAATGATGCAGATGATAACTCATCTCGATGA
AA sequence Show only first row Show all	>Potri.015G035500.1 pacid=42775252 polypeptide=Potri.015G035500.1.p locus=Potri.015G035500 ID=Potri.015G035500.1.v4.1 annot-version=v4.1 METITLLLFLLLISLPHSKPDLSPDHSALLSLRSAVHGRTLLWNVSLQSPCSWTGVKCEQNRVTVLRLPGFALTGEIPLGIFSNLTQLRTLSLRLNALTG NLPQDLANCKSLRNLYLQGNLFSGEIPDFLFSLKDLVRLNLAENNFTGEISPGFDNFTRLRTLFLEDNLLTGSLPDLKLEKLKQFNVSNNLLNGSIPDTF KGFGPSSFGGTSLCGKPLPDCKDSGGAIVVPSTPNGGGQGKRKKLSGGAIAGIVIGSIVGLLLIVMILMFLCRKNSSNKSRSIDIASIKQEMEIQGDKPI VEAENGGGYGNGYSVAAAAAAAMVGNGKGGDLNSGGAKKLVFFGKAPRVFDLEDLLRASAEVLGKGTFGTAYKAVLEMGTVVAVKRLRDVTISEIEFREK IETVGAMDHENLVPLRAYYYSRDEKLLVYDYMSMGSLSALLHGNKGAGRAPLNWEIRSGIALAAARGIEYLHSQGPNVSHGNIKSSNILLTQSYDARVSD FGLAHLVGPPSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPAHALLNEEGVDLPRWVQSIVREEWTSEVFDLELLRYQNVEEEMVQLLQ LGIDCAAQYPDNRPSMSAVTRRIEELCRSSLREHHGPQPEPSNDADDNSSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Potri.015G035500 [exp]	0	1
AT2G38970			Zinc finger (C3HC4-type RING f...		Potri.008G038450 [exp]	3.46	0.9072
AT1G27210			ARM repeat superfamily protein...		Potri.008G192100 [exp]	4.24	0.8937
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Potri.011G064400 [exp]	5.00	0.9155
AT1G76670			Nucleotide-sugar transporter f...		Potri.002G000500 [exp]	9.16	0.9056
AT3G16060			ATP binding microtubule motor ...		Potri.003G053800 [exp]	9.27	0.9082
AT3G45400			exostosin family protein (.1)		Potri.019G044600 [exp]	10.00	0.8884
AT5G18520			Lung seven transmembrane recep...		Potri.016G081300 [exp]	14.59	0.9080
AT3G02350		GAUT9	galacturonosyltransferase 9 (....		Potri.004G111000 [exp]	22.36	0.8923
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.013G123600 [exp]	22.58	0.9059	Pt-RAB11.8
AT3G57830			Leucine-rich repeat protein ki...		Potri.016G050800 [exp]	25.74	0.8937

Compare expression of checked genes

Potri.015G035500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.