Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17850 1544 / 0 Protein kinase superfamily protein (.1) AT1G48490 1397 / 0 Protein kinase superfamily protein (.1.2.3) AT5G62310 1040 / 0 IRE INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G45160 636 / 0 Protein kinase superfamily protein (.1.2) AT3G23310 280 / 1e-81 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G30640 279 / 1e-81 Protein kinase family protein (.1) AT4G14350 277 / 4e-81 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein AT4G33080 275 / 1e-80 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2) AT2G20470 271 / 2e-78 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT5G09890 266 / 2e-77 Protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G044700 [exp] 2137 / 0 AT3G17850 1531 / 0.0 Protein kinase superfamily protein (.1) Potri.015G129200 [exp] 1068 / 0 AT5G62310 1359 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.012G127800 [exp] 1050 / 0 AT5G62310 1318 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.002G263000 [exp] 694 / 0 AT1G45160 1162 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G167800 [exp] 279 / 9e-82 AT4G14350 905 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.011G157000 [exp] 276 / 3e-80 AT4G14350 800 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.010G070600 [exp] 273 / 2e-79 AT4G14350 894 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.005G226700 [exp] 270 / 3e-78 AT2G20470 826 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.006G146900 [exp] 269 / 4e-78 AT2G19400 755 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031332 [exp] 1724 / 0 AT3G17850 1526 / 0.0 Protein kinase superfamily protein (.1) Lus10031906 [exp] 1491 / 0 AT1G48490 1358 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10027196 [exp] 810 / 0 AT5G62310 1484 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10038912 [exp] 807 / 0 AT5G62310 1483 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10005470 [exp] 665 / 0 AT1G45160 977 / 0.0 Protein kinase superfamily protein (.1.2) Lus10021176 [exp] 278 / 1e-81 AT4G14350 861 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10011814 [exp] 278 / 1e-81 AT4G14350 888 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10033911 [exp] 274 / 1e-79 AT2G20470 831 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10003541 [exp] 271 / 1e-78 AT2G20470 850 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10042650 [exp] 262 / 5e-76 AT5G09890 857 / 0.0 Protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.015G035600.7 pacid=42775305 polypeptide=Potri.015G035600.7.p locus=Potri.015G035600 ID=Potri.015G035600.7.v4.1 annot-version=v4.1 ATGGTGTTCAAGAACAAGCTGTTTTTCTCATCTTCAAAGAAATCAGAAACTTCTAGTCCTGATGGATCCAACAACAGTCCAAGATCAATCGGGTCGAATT CACCGATCCGATCCGACAAGAAGAAAGCCTCCAAATCTAAAAATTCAACCCCAACTACTCCAACTAGTACTGGTAGTTCTAGTAATTTTACTTGCAAGCA AACCCAAGTTAAAGATGGGGTAAAAAAGAAAGACTCGTTTTTTAAAGGCAAAGAAACTGTGAACCAACCTCAAACTCCTACCAAACCCGGGACTTCAAAT TCTGGGACGGGTTTAAAATCCAAAAAAGGTGATGTTTTGGTTGAAAATAAGGAGAAAGAAGCAGAAAAATCGTCAGTTTCGCCGATTTTAGCATCATCTT TGGGGTTAAATAGGATCAAAACAAGATCAGGGCCATTGCCACAAGAGAGTTTCTTTGGTTTTAGAGGTGATAAAGGGAGTGGTGTATTGGGGTCTAGTAA TTTGTCAAGGCGTGGTGGGGATGGAGGGTCGGGTTCGAATTCAAGTTCTTTAGGGTCAGGGAAGAAGAAGGAAGGGATAGAGGGGCAGAGTAAGTTGACG GGGTTTCAAGAGAGTGGTAACGGTGGTGACAATTGGGACAGTATGTCTACAGGAAGTGGAGGAGGACAATCTAGAGAGGTCAGTCCTAATTTGCAGGCAA GGACTAGGTTGCAGAATGGGGAGTCATCTAGTGAAGCTGGTCAACATAATTCATCATGGGGGCACTCTGAGAGCTTGCAAAGCTCTGATGTTTTTACACC TGAGACTTATGATTGTAACAACCCAAAGGAGTCTGAATCTCCCAGGTTTCAAGCAATACTTCGTGTGACAAGTGCCCCTAGAAAGAGGTTTCCTGCTGAT ATCAAAAGTTTCTCCCATGAATTAAATTCCAAAGGTGTACGACCTTTCCCATTTTGGAAGCCTCGAGGGTTAAATAACTTGGAGGAGATCTTGGTTGTCA TACGGGCAAAGTTTGACAAAGCAAAGGAAGAAGTGAATTCTGACCTGGCTGTCTTTGCAGCAGATCTGGTTGGAATTCTTGAAAAAAATGCAGATAGTCA TCCTGAGTGGCAGGAAACTATTGAAGACTTGTTGGTTTTAGCTCGGAGTTGTGCTATGACATCACCTGGAGAGTTCTGGCTTCAGTGTGAAGGTATAGTC CAAGATTTGGATGATAGACGCCAAGAACTTCCTCCAGGAATACTGAAGCAGCTCCATACCCGAATGCTTTTCATCCTTACAAGGTGTACCAGATTGTTGC AATTCCACAAGGAAAGTGGGCTGGCTGAGGATGAAAATATTTTCCAGCTTCATCAGCTTAGGCTTTTGCAGTCTGCAGATAAACACATTCCTCCAGGTGT TGGTAGGGATGGAAAAATTTCTAGTGCTCCAAAGAAGGCAGCTTCGGCAAAGAAATCATACAGTCAAGAGCAGAAGGCTGCATCAGTAAGGAAATCATAT AGTCAAGAGCAGTGTGCTTGGGGCAGAGAACAAGATGTACTGCCAGGAAAATTCCTCTCCCCTGCTGATAACACTCCAAAGAGTGACGAATCTCCTACGG GAAGGAATCGGATCTCTTCTTGGAAGCCACTCCCATCTCCTCCTGTAAAAATTACAAAGGAAGTTGTTCCTCCAAGGGGGCAGAATGATGATAAGAATGA ACCTTTGAAAACGTCAAATGACAGGAAAGGAGCTTCTGATGTGCTTCTGGCTGCTGCTAAAGCTTCTGAGCTTCCATTGGTCAAAGATTTGCATGAACAT TCTACAAAGCACCAACACAAAATTTCTTGGGGTAACTGGGGTGATCAGCAGAATATTGCTGATGAGAGTTCAATAATTTGTCGCATTTGTGAGGAGGAAG TTCCAACTTTATATGTAGAAGACCATTCAAGAATTTGTGCAATTACAGATCGATGTGATCAGATGTGTCTAAGTGTGAATGAGCGCTTGATCAGAATTTC TGAAACGCTTGAGAAGATGATAGAATCCTTTGCACAGAAGGATATCCAACATGCAGTGGGAAGCCCAGACATTGCAAAAGTATCAAATTCCAGTGTGACC GAAGAATCTGATGTTCTCTCACCAAAACTCAGTGATTGGTCTCGGAGAGGGTCTGAGGACATGCTCGATTTCTTTCCTGAAGCTGATAATTCTATTTTTA TGGATGACATGAAGGGTTTACCTTCCATGTCATGTAAAACCCGTTTTGGTCCCAAGTCTGATCAGGGAATGGCCACATCATCAGCTGGTAGCATGACTCC TAGATCTCCATTATTGACACCAAGGAATAGTCAGATAGACTTGCTTTTGGCAGGGAAGAGTGCCTTTTCCGAGCATGATGATCTTCCACAGCTGAATGAA CTTGCTGATATTGCAAGATGTGTAGCAACTATGCCATTGGAGGATGATCGTGCCATATCCTATTTGCTAACTTGTCTTGAAGACTTGAGGGTAGTCATTG ACAGGAGAAAGTTTGATGCTCTTATGGTGGAGACTTTTGGGACACGAATTGAGAAGCTTATTCGAGAGAAGTATTTGCAGCTCTGTGAGCTAGTGGGAGA TGAGAAGGTTGATATAACAAATACTGTAATTGATGAAGATGCTCCTCTGGAAGATGATGTTGTTCGAAGCTTGAGAACAAGTCCCACACATCCTTCTAAG GATCGTACCTCCATAGATGACTTCGTGATAATAAAACCAATAAGTCGTGGTGCCTTTGGACGGGTGTTTTTAGCTAAAAAGAGAACAACTGGAGATCTTT TTGCCATAAAGGTTCTTAAAAAGGCTGATATGATCCGCAAGAATGCAGTTGAAAGTATACTGGCTGAACGAGATATTTTAATTTCAGTCCGCAATCCCTT TGTGGTTCGCTTCTTCTATTCATTTACTTGTCGTGAGAATTTGTATCTTGTGATGGAGTATTTGAATGGTGGCGACTTGTATTCATTGTTGAGAAATCTG GGCTGCTTAGATGAAGATGTTGCTAGGGTATACATTGCAGAAGTTGTGCTTGCTTTGGAATATTTACACTCACTGCATGTAGTTCATCGTGATTTGAAGC CTGATAATTTGTTGATTGCACATGATGGGCACATCAAGTTGACAGACTTTGGTCTTTCCAAGGTTGGTCTCATCAATAGCACTGATGATTTATCTGGTCC AGCTGTTAGTGGGACATCCATGCTTGTGGACGATGAACCTCAACTATCCACTTCTGAGCATCAGCGAGAAAGGCGGAAGAAACGTTCTGCTGTGGGTACA CCTGATTATCTGGCACCAGAGATACTATTGGGAACGGGACATGGAACAACCGCTGATTGGTGGTCTGTGGGTGTTATTTTATTTGAACTGATTATTGGTA TTCCACCCTTTAATGCGGAGCATCCCCAGACAATATTTGATAATATTCTCAACCGTAACATACCTTGGCCCCGGGTGCCTGAAGAAATGAGTCCTGAAGC ACAGGATCTAATTGATAGATTATTAACTGAAGTTCCTGACCAGAGACTTGGAGCTGGAGGAGCGTCAGAGGTGAAGCAGCATATATTCTTTAAAGATATC AACTGGGACACACTTGCTAGGCAGAAGGCTGCATTTGTGCCCAGTTCAGAGAGCGCACTAGATACAAGCTACTTCACAAGTCGATACTCGTGGAATACTT CAGATGACCCAAATTATCCAGCCAGTGACTTTGAGGATTCAAGTGATTCTGATAGCTTGAGTGGCAGCAGTAGCTGCTTAAGCCATCGCCATGATGAAGT GGGAGATGAATGTGGAGGTCTTGCTGAATTTGAGTCTGGTTCATGTGTCAATTACTCCTTCAGTAATTTTTCATTTAAGAATCTCTCCCAGCTTGCATCA ATCAACTATGATCTTCTCTCTAAGGGTTGGAAGGACGATCCATCAACAACTAATTCATGA
AA sequence Show only first row Show all	>Potri.015G035600.7 pacid=42775305 polypeptide=Potri.015G035600.7.p locus=Potri.015G035600 ID=Potri.015G035600.7.v4.1 annot-version=v4.1 MVFKNKLFFSSSKKSETSSPDGSNNSPRSIGSNSPIRSDKKKASKSKNSTPTTPTSTGSSSNFTCKQTQVKDGVKKKDSFFKGKETVNQPQTPTKPGTSN SGTGLKSKKGDVLVENKEKEAEKSSVSPILASSLGLNRIKTRSGPLPQESFFGFRGDKGSGVLGSSNLSRRGGDGGSGSNSSSLGSGKKKEGIEGQSKLT GFQESGNGGDNWDSMSTGSGGGQSREVSPNLQARTRLQNGESSSEAGQHNSSWGHSESLQSSDVFTPETYDCNNPKESESPRFQAILRVTSAPRKRFPAD IKSFSHELNSKGVRPFPFWKPRGLNNLEEILVVIRAKFDKAKEEVNSDLAVFAADLVGILEKNADSHPEWQETIEDLLVLARSCAMTSPGEFWLQCEGIV QDLDDRRQELPPGILKQLHTRMLFILTRCTRLLQFHKESGLAEDENIFQLHQLRLLQSADKHIPPGVGRDGKISSAPKKAASAKKSYSQEQKAASVRKSY SQEQCAWGREQDVLPGKFLSPADNTPKSDESPTGRNRISSWKPLPSPPVKITKEVVPPRGQNDDKNEPLKTSNDRKGASDVLLAAAKASELPLVKDLHEH STKHQHKISWGNWGDQQNIADESSIICRICEEEVPTLYVEDHSRICAITDRCDQMCLSVNERLIRISETLEKMIESFAQKDIQHAVGSPDIAKVSNSSVT EESDVLSPKLSDWSRRGSEDMLDFFPEADNSIFMDDMKGLPSMSCKTRFGPKSDQGMATSSAGSMTPRSPLLTPRNSQIDLLLAGKSAFSEHDDLPQLNE LADIARCVATMPLEDDRAISYLLTCLEDLRVVIDRRKFDALMVETFGTRIEKLIREKYLQLCELVGDEKVDITNTVIDEDAPLEDDVVRSLRTSPTHPSK DRTSIDDFVIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKKADMIRKNAVESILAERDILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNL GCLDEDVARVYIAEVVLALEYLHSLHVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLSGPAVSGTSMLVDDEPQLSTSEHQRERRKKRSAVGT PDYLAPEILLGTGHGTTADWWSVGVILFELIIGIPPFNAEHPQTIFDNILNRNIPWPRVPEEMSPEAQDLIDRLLTEVPDQRLGAGGASEVKQHIFFKDI NWDTLARQKAAFVPSSESALDTSYFTSRYSWNTSDDPNYPASDFEDSSDSDSLSGSSSCLSHRHDEVGDECGGLAEFESGSCVNYSFSNFSFKNLSQLAS INYDLLSKGWKDDPSTTNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17850			Protein kinase superfamily pro...		Potri.015G035600 [exp]	0	1
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Potri.008G192200 [exp]	1.41	0.8746	SNT901
AT5G47020			unknown protein		Potri.003G086200 [exp]	1.73	0.8475
AT2G15900			Phox-associated domain;Phox-li...		Potri.004G146600 [exp]	2.44	0.8481
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Potri.002G159300 [exp]	6.00	0.7828
					Potri.017G058800 [exp]	6.24	0.7477
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Potri.013G032100 [exp]	6.48	0.7734
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.004G104201 [exp]	7.41	0.8185
AT3G02260		CRM1, TIR3, LPR...	UMBRELLA 1, TRANSPORT INHIBITO...		Potri.017G101100 [exp]	7.41	0.7923
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Potri.008G035200 [exp]	8.48	0.8204
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Potri.008G037800 [exp]	8.71	0.7484

Compare expression of checked genes

Potri.015G035600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.