Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17860 218 / 8e-68 ZIM TIFY6B, JAI3, JAZ3 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) AT1G48500 166 / 5e-48 ZIM TIFY6A, JAZ4 TIFY DOMAIN PROTEIN 6A, jasmonate-zim-domain protein 4 (.1.2.3) AT1G70700 89 / 4e-20 ZIM TIFY7, JAZ9 JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY domain/Divergent CCT motif family protein (.1.2) AT1G74950 54 / 5e-08 ZIM TIFY10B, JAZ2 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) AT1G19180 53 / 6e-08 ZIM TIFY10A, JAZ1 jasmonate-zim-domain protein 1 (.1.2) AT1G17380 52 / 2e-07 ZIM TIFY11A, JAZ5 jasmonate-zim-domain protein 5 (.1) AT3G43440 50 / 8e-07 ZIM TIFY3A, JAZ11 jasmonate-zim-domain protein 11 (.1.2) AT5G20900 47 / 4e-06 ZIM TIFY3B, JAZ12 jasmonate-zim-domain protein 12 (.1) AT4G14720 47 / 1e-05 ZIM TIFY4B, PPD2 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) AT4G14713 47 / 1e-05 ZIM TIFY4A, PPD1 PEAPOD 1, TIFY domain/Divergent CCT motif family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G044900 [exp] 568 / 0 AT3G17860 235 / 2e-74 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.008G133400 [exp] 224 / 2e-70 AT3G17860 169 / 1e-49 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.010G108200 [exp] 187 / 9e-56 AT3G17860 180 / 7e-54 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.003G068900 [exp] 58 / 2e-09 AT1G72450 129 / 4e-36 TIFY DOMAIN PROTEIN 11B, jasmonate-zim-domain protein 6 (.1) Potri.001G166200 [exp] 56 / 2e-08 AT1G19180 112 / 1e-29 jasmonate-zim-domain protein 1 (.1.2) Potri.018G033700 [exp] 50 / 2e-06 AT4G32570 191 / 9e-57 TIFY domain protein 8 (.1) Potri.018G047100 [exp] 48 / 3e-06 AT5G20900 122 / 6e-35 jasmonate-zim-domain protein 12 (.1) Potri.006G247500 [exp] 48 / 7e-06 AT4G32570 187 / 3e-55 TIFY domain protein 8 (.1) Potri.005G214300 [exp] 46 / 3e-05 AT4G14720 153 / 1e-43 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017991 [exp] 253 / 2e-80 AT3G17860 189 / 3e-56 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Lus10041986 [exp] 238 / 3e-75 AT3G17860 174 / 4e-51 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Lus10031333 [exp] 202 / 1e-60 AT3G17860 155 / 8e-44 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Lus10031907 [exp] 162 / 1e-43 AT3G17910 378 / 5e-125 SURFEIT 1, EMBRYO DEFECTIVE 3121, Surfeit locus 1 cytochrome c oxidase biogenesis protein (.1) Lus10027648 [exp] 64 / 4e-11 AT1G19180 159 / 3e-47 jasmonate-zim-domain protein 1 (.1.2) Lus10039911 [exp] 64 / 5e-11 AT1G19180 161 / 3e-48 jasmonate-zim-domain protein 1 (.1.2) Lus10036584 [exp] 48 / 5e-06 AT1G74950 64 / 9e-12 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10013138 [exp] 48 / 8e-06 AT4G32570 152 / 2e-42 TIFY domain protein 8 (.1) Lus10008101 [exp] 48 / 8e-06 AT4G32570 155 / 2e-43 TIFY domain protein 8 (.1) Lus10035804 [exp] 47 / 2e-05 AT5G20900 62 / 3e-11 jasmonate-zim-domain protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06200 [poplar] [flax] tify tify domain CL0281 [poplar] [flax] CCT PF09425 [poplar] [flax] Jas_motif Jas motif
Representative CDS sequence Show only first row Show all	>Potri.015G035800.2 pacid=42775449 polypeptide=Potri.015G035800.2.p locus=Potri.015G035800 ID=Potri.015G035800.2.v4.1 annot-version=v4.1 ATGGAGAGAGATTTTCTGGGTCTGGGTTCGAAAAACAATCCTGTTACTATCAAAGAAGAGGCCACCGATACTCCTCTTAAGGATTCTGTGCCCATGAGAG GTTCAGGGATGCAGTGGTCTTTTTCAAACAAGGTTTCTGCCATTCCTCAATTCTTGTCGTTCAAGTCTTCCATGGAAGATAAACCAAGAAAGGCTGTTCA TGATCCCATGGCATCATCATCCTCTGGCTATATGTCAATTTCAACTGCTGATGCTTTTGATTCTAACCAGAAATCATACTCTGCCTTGATTCAGAAAAAT ATGGCTCTTGATAAACAAGCTGGAAACCATTATGCTATGACAACCTATGGTAAACAGCATTTCGATGCCTATTTTGCTAATCGCCCACAGGATATGAGGA TGTTTCCAATCTCCAGCCAACAAAATCAAACAATCAACGTTTCTATGAGCTCCCCCATTCTGCAGTCCCTTTTTCCTCCCACTGGACACAGCATGATTAC TTCTAATTCAATAGTCTCAAAACCTCTCGGAGGAGTTCCAGTCATAACCCCTGCTTCTGCTCTTCCTACCCCGAGTTCCGTCATTGGCACCACTGATCTT AGGGATGTTGCTAAATCCTCTGGAGCACCTGCCCAGTTGACCATATTCTACGCTGGTTCAGTGAGTGTTTATGATGATGTTTCTCCTGAGAAGGCACAGG CCATTATGCTTTTGGCTGGAAATGGTGGCTCTTCTGGGACTCAGAATAAGCCAATCTCCACGCCTCAAGCACAGGCACAAGCACCAATTCCTGGACCACC TGTAGGTGATATTTTTGTTGGGAACAAAATCAACACTACAGCTCCATGCTCAGGCATGCCAAGCCCTATTTCTGTGACCTCTAGTAGCACCAACGATTTA GCAATAGTTAAGCCAGTAGTAAATTTAGCACCTTCTGTTAAACATATAGAGCCCACCAAGCCAGCTAGTTCAGTAGGACCTACTTCTGCCACTCTAGTTC CAGCAGCAGTGGCTGTACCTCAGGCTCGTAAAGCATCGTTGGCTCGGTTTTTGGAGAAGCGCAAGGAAAGGGTGATGCAAACATCGCCCTATAATGGAAG CAAGAAGTCTCCCGAGGGTGGTGCCCATAGATTTGATGGTATGAGTTTATCTATGAGCACCTCTAGCTCTTTCCCTCTCCCAGCCAGCAATTAG
AA sequence Show only first row Show all	>Potri.015G035800.2 pacid=42775449 polypeptide=Potri.015G035800.2.p locus=Potri.015G035800 ID=Potri.015G035800.2.v4.1 annot-version=v4.1 MERDFLGLGSKNNPVTIKEEATDTPLKDSVPMRGSGMQWSFSNKVSAIPQFLSFKSSMEDKPRKAVHDPMASSSSGYMSISTADAFDSNQKSYSALIQKN MALDKQAGNHYAMTTYGKQHFDAYFANRPQDMRMFPISSQQNQTINVSMSSPILQSLFPPTGHSMITSNSIVSKPLGGVPVITPASALPTPSSVIGTTDL RDVAKSSGAPAQLTIFYAGSVSVYDDVSPEKAQAIMLLAGNGGSSGTQNKPISTPQAQAQAPIPGPPVGDIFVGNKINTTAPCSGMPSPISVTSSSTNDL AIVKPVVNLAPSVKHIEPTKPASSVGPTSATLVPAAVAVPQARKASLARFLEKRKERVMQTSPYNGSKKSPEGGAHRFDGMSLSMSTSSSFPLPASN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Potri.015G035800 [exp]	0	1
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Potri.014G057700 [exp]	2.00	0.9018
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Potri.001G188500 [exp]	2.23	0.8920
AT2G44940	AP2_ERF		Integrase-type DNA-binding sup...		Potri.014G055700 [exp]	3.46	0.8925
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Potri.005G053000 [exp]	4.00	0.8742
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Potri.010G241500 [exp]	6.48	0.8764
AT1G12600			UDP-N-acetylglucosamine (UAA) ...		Potri.014G077500 [exp]	7.54	0.8953
AT5G20110			Dynein light chain type 1 fami...		Potri.001G124700 [exp]	9.16	0.8585
AT2G45970		CYP86A8, LCR	LACERATA, "cytochrome P450, fa...		Potri.014G085800 [exp]	11.26	0.9055	Pt-CYP86.6
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Potri.006G046900 [exp]	13.96	0.8577
AT3G49900			Phototropic-responsive NPH3 fa...		Potri.005G149400 [exp]	19.41	0.8614

Compare expression of checked genes

Potri.015G035800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.