Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATTDX.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17880 396 / 5e-137 ATHIP2, ATTDX HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) AT4G22670 247 / 5e-78 ATHIP1, TPR11 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) AT3G51030 123 / 2e-34 ATTRX1, ATTRXH1 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) AT1G19730 119 / 9e-33 ATTRX4, ATH4 thioredoxin H-type 4, Thioredoxin superfamily protein (.1) AT1G45145 114 / 5e-31 LIV1, ATTRX5, ATH5 LOCUS OF INSENSITIVITY TO VICTORIN 1, thioredoxin H-type 5 (.1) AT5G42980 109 / 4e-29 ATTRXH3, ATTRX3, ATH3 THIOREDOXIN H3, thioredoxin H-type 3, thioredoxin 3 (.1) AT3G08710 109 / 6e-29 TRXH9, ATH9 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) AT5G39950 102 / 2e-26 ATTRXH2, ATTRX2, ATH2 Arabidopsis thioredoxin h2, thioredoxin 2 (.1) AT1G69880 98 / 2e-24 ATH8 thioredoxin H-type 8 (.1) AT1G59730 96 / 6e-24 ATH7 thioredoxin H-type 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G045000 [exp] 446 / 2e-157 AT3G17880 379 / 4e-131 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Potri.003G114000 [exp] 251 / 8e-80 AT4G22670 335 / 5e-112 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) Potri.001G118900 [exp] 248 / 1e-78 AT4G22670 333 / 3e-111 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) Potri.002G030000 [exp] 120 / 4e-33 AT3G51030 160 / 3e-52 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.007G018000 [exp] 119 / 1e-32 AT3G51030 186 / 2e-62 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.005G232700 [exp] 118 / 2e-32 AT3G51030 162 / 5e-53 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.006G110100 [exp] 110 / 4e-29 AT3G08710 178 / 1e-58 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Potri.016G138800 [exp] 107 / 5e-28 AT3G08710 208 / 1e-70 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Potri.017G076700 [exp] 105 / 2e-27 AT5G39950 168 / 7e-55 Arabidopsis thioredoxin h2, thioredoxin 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031334 [exp] 265 / 4e-85 AT3G17880 456 / 3e-160 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Lus10032227 [exp] 253 / 1e-80 AT4G22670 403 / 2e-138 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) Lus10024590 [exp] 248 / 3e-78 AT4G22670 394 / 9e-135 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) Lus10024293 [exp] 120 / 3e-33 AT3G51030 162 / 4e-53 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10000802 [exp] 118 / 2e-32 AT3G51030 165 / 5e-54 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10014277 [exp] 114 / 8e-31 AT3G51030 185 / 4e-62 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10014186 [exp] 114 / 1e-30 AT3G08710 192 / 3e-64 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Lus10041799 [exp] 112 / 6e-30 AT3G51030 182 / 8e-61 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10022727 [exp] 112 / 1e-29 AT3G08710 189 / 6e-63 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Lus10028349 [exp] 107 / 3e-28 AT3G51030 179 / 1e-59 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00085 [poplar] [flax] Thioredoxin Thioredoxin CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.015G036000.4 pacid=42776147 polypeptide=Potri.015G036000.4.p locus=Potri.015G036000 ID=Potri.015G036000.4.v4.1 annot-version=v4.1 ATGTTCCAGATGGATGCCGCTAAAGTAACTGAGCTCAAACACTTTATTGATCAGTGTAAGGCTAACCCTTCTATTATCCACACCCCATCTCTTGCTTTCT TCAAGACTTATCTTCAAAGCCTAGGTGCTCGATTTCCTCCAGAGACAAAATCGGGTGCTCATATGCAGGAGAAAGGTGATATTGACATGGCTGACTCTGG GGAATACTCTGATTCCAAAAGACCAATTGAAGATGATGATGAAATTGTTGAGTCTGATATTGACTTGGATAATACTGATGTCGTGGAACCTGACAATCAT CCTCCACAAAAGATGGGAGATCCTGCAGTTGAAGTTACAGAAGAAAAGCGGGATGCTGCTAAAACCGAAAAATCAAAAGCTATGGATGCAATCTCTGAAG GTAAGCTGGAAGAAGCCATAGATCATTTAACAGAAGCCATCACGTTGAATCCAACTTCAGCTATATTATATGCCACACGAGGTAGTGTTTTTGTTAAACT GAAGAAACCTCTTGCTGCGATTCGTGATGCTGATGCCGCTCTAGCAATCAATCCAAACTCTGCAAAAGGATATAAAGTACGAGGTATGGCCAGAGCCATA TTGGGCCAATGGGAACAAGCAGCAACTGACCTGCATGAGGCGTCAAAGTTGGACTATGATGATGAGATTGGTTTGGTGCTGAAAAAGGTTGAACCTAATG CCCGCAAAATTGAAGAGCATCGTAGAAAATATGAACGCCTCCGAAAAGAAAGGGAGCTAAAGAAAGCCGAACTTGAGAGAAAACAACAAGCTGAAGCCCA AGAAAGAGAAGCCTTATCTGCTCTGAAGGAAGGACAAGTTATAGGCATTCATTCTGCCAAGGAACTAGATCCCAAACTGAATGCTGCGTCAAGAACTTCC CGCCTTGCAATCCTGTACTTCACCGCATCGTGGTGCGGACCATGTCGAATGATTGCTCCCATTTTCACAAGCTTAGCTGCGAAGTACCTGAAAGTTGTTT TCTTGAAAGTTGACATAGACGAGGCAAGAGATGTTGCTGCACGCTGGAACATCAGCAGTGTTCCTACCTTCTACTTTATAAAGAATGGCAAGGAGATTGA CAAGGTTGTGGGGGCTGATAAAAATGAATTGGAAAGGAAGGTTAAACAACATTCTGGCTAG
AA sequence Show only first row Show all	>Potri.015G036000.4 pacid=42776147 polypeptide=Potri.015G036000.4.p locus=Potri.015G036000 ID=Potri.015G036000.4.v4.1 annot-version=v4.1 MFQMDAAKVTELKHFIDQCKANPSIIHTPSLAFFKTYLQSLGARFPPETKSGAHMQEKGDIDMADSGEYSDSKRPIEDDDEIVESDIDLDNTDVVEPDNH PPQKMGDPAVEVTEEKRDAAKTEKSKAMDAISEGKLEEAIDHLTEAITLNPTSAILYATRGSVFVKLKKPLAAIRDADAALAINPNSAKGYKVRGMARAI LGQWEQAATDLHEASKLDYDDEIGLVLKKVEPNARKIEEHRRKYERLRKERELKKAELERKQQAEAQEREALSALKEGQVIGIHSAKELDPKLNAASRTS RLAILYFTASWCGPCRMIAPIFTSLAAKYLKVVFLKVDIDEARDVAARWNISSVPTFYFIKNGKEIDKVVGADKNELERKVKQHSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17880		ATHIP2, ATTDX	HSC-70 INTERACTING PROTEIN, AR...		Potri.015G036000 [exp]	0	1	ATTDX.2
AT2G05830			NagB/RpiA/CoA transferase-like...		Potri.006G219900 [exp]	4.24	0.7666
AT1G27000			Protein of unknown function (D...		Potri.008G149000 [exp]	5.65	0.7913
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Potri.011G031000 [exp]	5.74	0.8091
AT3G47180			RING/U-box superfamily protein...		Potri.005G180300 [exp]	6.92	0.8100
AT2G25920			unknown protein		Potri.002G198400 [exp]	10.24	0.7622
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Potri.006G095500 [exp]	10.48	0.7856	UCP2.2
AT4G22160			unknown protein		Potri.004G004100 [exp]	11.48	0.8002
					Potri.012G021500 [exp]	12.16	0.8051
					Potri.015G025700 [exp]	13.00	0.7798
AT1G26320			Zinc-binding dehydrogenase fam...		Potri.017G002300 [exp]	14.31	0.8036

Compare expression of checked genes

Potri.015G036000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.