Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48540 867 / 0 Outer arm dynein light chain 1 protein (.1.2) AT3G17920 646 / 0 Outer arm dynein light chain 1 protein (.1.2) AT5G22320 54 / 6e-07 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT1G78230 51 / 4e-06 Outer arm dynein light chain 1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G045300 [exp] 1691 / 0 AT3G17920 917 / 0.0 Outer arm dynein light chain 1 protein (.1.2) Potri.002G097800 [exp] 64 / 3e-10 AT1G78230 523 / 3e-178 Outer arm dynein light chain 1 protein (.1) Potri.019G119500 [exp] 50 / 1e-05 AT4G03260 521 / 3e-177 Outer arm dynein light chain 1 protein (.1.2) Potri.005G227600 [exp] 45 / 0.0002 AT4G28560 444 / 2e-153 ROP-interactive CRIB motif-containing protein 7 (.1) Potri.001G262800 [exp] 44 / 0.001 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017994 [exp] 813 / 0 AT1G48540 685 / 0.0 Outer arm dynein light chain 1 protein (.1.2) Lus10041988 [exp] 472 / 8e-150 AT3G17920 365 / 1e-111 Outer arm dynein light chain 1 protein (.1.2) Lus10041989 [exp] 60 / 4e-11 AT3G17920 64 / 3e-14 Outer arm dynein light chain 1 protein (.1.2) Lus10003624 [exp] 49 / 2e-05 AT4G28560 441 / 2e-152 ROP-interactive CRIB motif-containing protein 7 (.1) Lus10033407 [exp] 48 / 6e-05 AT3G03770 666 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10040500 [exp] 47 / 0.0001 AT5G06940 1004 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10038875 [exp] 47 / 0.0001 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10011302 [exp] 47 / 0.0001 AT5G06940 984 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10034873 [exp] 47 / 0.0001 AT3G03770 668 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10003229 [exp] 46 / 0.0001 AT2G19330 408 / 4e-142 plant intracellular ras group-related LRR 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G036300.4 pacid=42776023 polypeptide=Potri.015G036300.4.p locus=Potri.015G036300 ID=Potri.015G036300.4.v4.1 annot-version=v4.1 ATGGCGATCGTAACAGGAGATCGTTATCTAGAAAAACTAGTCAAATTCGTTGAAGAACAAGCCGGTTCGTTAATTGACGGGACCCTTGTCTTAAAGCTTT ACCCAGGCGGTCTCCGCTACGTCGATTCACGACTCGAATCACTACACGAGTTAGAGAATTTATTATCCGGAGCTCCAGTTGATTATCTTCGCGCTTACAT TTCTGACCTCGGTGACCACCGTGCTCTCGAGCAGTTACGGCGGATTCTCCGTTTGTTGACGGAGTTAAAGGTTGTTTCGGTTTTGCCTCCGACGACGCGT GATCCGACGCCGGTTTGTTTGGTTCCGTTTGGGAGATTGAGGGTTTTGGAACTTAGAGGTTGTGATTTGTCTACGTCAGCTGCCAAAGGGTTGCTTGAAT TGAGACATACTCTGGAGAAGATTGTTTGTCACAATTCTACTGATGCATTACGGCATGTATTTGCTAGTAGGATTGTGGAGATAAAGGACTCACCGCAATG GAATCGGTTGTCATTTGTATCGTGTGCGTGTAATCGACTGATTTTGATGGATGAGTCTTTGCAACTTCTTCCTGTTGTGGAAACTCTTGATTTGAGTCGA AATAAGTTTGCAAAGGTGGATAATTTGCGGAAGTGTACCAAATTGAAGCACTTGGATCTTGGGTTCAATCATCTGAGATCAATTGCACCCTTTTATGAGA TCTCCTGTCACATTGTTAAACTTGTTTTGAGGAACAATGCCCTAACAACATTACATGGGCTTGAGAATTTGAAGTCACTTGAAGCCCTTGATGTGTCCTA TAATATTATTTCCAATTTCTCAGAGCTGGAGTTCCTTACTGGCCTCCCATGTTTGCGAAACTTGTGGTTGGAAGGAAATCCTTTGTGCGGTGCCCGATGG TATCGGGCTCAAGTATTCAGCTATGTTGTTCATCCAGAAGCAGTGAAGTTAGACGACCAAGAAATCAGCGCAAGAGAGTTTTGGAAGAGGCAAATCATAA TTGCCAGGAGGCAGAAACGACCTACCAGCTTTGGATTTTATTCTCCTGCTATAGGAGATGATGAAGGAGATGGAAATATCAACAGGAAAAGGAGTAAAGT ATCTCGTCTTGCTTCAATTTCGAATAAAGAAGAGACCATTTATTTTTCCTCTGACCAAGAGTCTCCATCTTTTGATAATGAGATTCAAAGCAAAGAGGAG AATGACGTATCTGATGATGAAGCTGAAATAGTTGATCTGATTAACAGAGTTGAGCTCATGAAAAAGGAGCGTTCTACTCTTTGGTTGCGGGAATTTAAGG ACTGGATGGATCATGAATCGGAGAATATTGTGGATTGCAGTACATATTGTGGGGTTACATTGCATCATGCAAAGGAAAATCATCCAACAAACAAGTCAAC ACAGAAGGACCATTGTGATAGTTCTAGAGATTCTATGGATGATCTTCAAGCTTCTGGAGATGAGACCAGTACAAATCTCCTTGAGTCTAATAGTTCATTT GTTGATACTGGATCATATGGTGGGGTTGCTTTACCAGGGATGGGGAACATGAATCTAAGACAGAAGCATCAAAAGTCTTATTTACATGAAGGGTCTGGTA GTATGTCTATGCAAAGTAGAAGTTCCCACACAGGTAGCTCTACTGTCCAAGAAGTCCATACAATAGTTGGAAATGGAAGCATATCACTGTTGACCACTCA TTCATCTCCTGCATATCCTAGGTCTCCTCCTCATTATGAGGAGGACATTTTGCAACGACGCAACAACTTGGTGGAAGAAATTTTGCAGCTATCTGCAGAA TCCTATTCAGTGGCATCATCTGACAGTAATACTAGCTCTAGTGATGATGATTTATACGAATTTGGAGATTCATCATATGAAGCTGCTAAATCACAAAATG AAGAGTATTTGAATCCCAAGGCCGGAGGGCAATTATCTTCTAATCCTTTGAAGGATCAAGGACATGGAATCCATCATGTGATGGAAAACGACAGTTATCT AAATGATTCACAAACCTCAATTTCCACAAAATTTTTGAGTTCGAACTCCAATGATTTCTCTGCTGGCTCTCATGATGGTGAAAATGCTCATTTTGCCAAC CCAGAGGCTGATTTGCTGGAGAAAGGAAAAAACAAAAGGAAACCAAGAAGAATAGTCATTTCTTTGCTAGAGAATATGGTTGGCAGGATAGGGAGACCAG AAAAATTAAATGGAAATGGGGATACTTGTGGAGCTGGTTTGGTGGATGAGCAAGGGGAACAAATTGTTTGTGAGAGTGATTTTCATGTTACTGATAAGAA ACAGCTGCACACAAATTCTTTTACAACCCTGGATGCTGTAAATGTCAATGGATTCTCTGATGATTTTATTGAGAATTATTTTAATGAGAAAGTAGCAGAT TCCAGAATTAATGAAAGCTGTAGGAATTATATGCGATGTGATTGCATACTAGAGCCAGAATCCATGTACAGAGAAAGAGAAGTAGTTTTGTTGCTGAGCA GTGAAGACAAGCTGTATGTACTGCTCATTGATGTAGCATTTGATGGATCGGGAAGCATTTTAAGTTTGCTGGGTTGGCACAGGGTTGAAGATGTTAGAGA AGTTTTAGTTGGTATAGGACTTCAGGTCGTGAGGGTATACATTGAAAGGGGAGCAACCTACCTGTTTCTAACGCGGAGCATTGAGAAGTCAAGGCAGGTA CTTGATATCTTGCAAGTTTCTGGACCATGCACAACAAATAATAAGTGTTTGCTGAAAAGTTTGGAGCAGGTTCAGGCTGAGTTGTTTTGGCAGAAAATAT GTCGAGGTTTGAAACTGAGCATATTCCAATATTCTATGGTGCTTTTTAGGCACAGGAAGAACGAAGAGGACTCGTGGCTTCCCAGATCACTGTTTGTAAG TGGGGGGCATGTGCTTTTGTGTGTTGAAGATCTTAAGCAGTTCAGGAGTTCCTCAGTGGATGCATCTTCGCCTCCATATTTCTTGCTTGATTCTTGTTGC TCCATTAGTGATGTGTCTGAGCTGGTTATTGAGGCCAGGGAGAGCTGGTTTATAACCTTAGCCCTTCAACATGCCCCAAAAAGCCTATCATCCAAATCTC AAAAGGATATCAAAACAAATGACAAGGATAACGAAGGTTCAGGTTCTCTGACATGGAAGCTTAAGTGGTTCTCAAAAGAGAACCTATTCAATTTTGTGGC TTTATTAAGGGCAATTCATGCAGGGGTAGCCGCGCTACCTATGCTAGTAACATATACTCCGTGA
AA sequence Show only first row Show all	>Potri.015G036300.4 pacid=42776023 polypeptide=Potri.015G036300.4.p locus=Potri.015G036300 ID=Potri.015G036300.4.v4.1 annot-version=v4.1 MAIVTGDRYLEKLVKFVEEQAGSLIDGTLVLKLYPGGLRYVDSRLESLHELENLLSGAPVDYLRAYISDLGDHRALEQLRRILRLLTELKVVSVLPPTTR DPTPVCLVPFGRLRVLELRGCDLSTSAAKGLLELRHTLEKIVCHNSTDALRHVFASRIVEIKDSPQWNRLSFVSCACNRLILMDESLQLLPVVETLDLSR NKFAKVDNLRKCTKLKHLDLGFNHLRSIAPFYEISCHIVKLVLRNNALTTLHGLENLKSLEALDVSYNIISNFSELEFLTGLPCLRNLWLEGNPLCGARW YRAQVFSYVVHPEAVKLDDQEISAREFWKRQIIIARRQKRPTSFGFYSPAIGDDEGDGNINRKRSKVSRLASISNKEETIYFSSDQESPSFDNEIQSKEE NDVSDDEAEIVDLINRVELMKKERSTLWLREFKDWMDHESENIVDCSTYCGVTLHHAKENHPTNKSTQKDHCDSSRDSMDDLQASGDETSTNLLESNSSF VDTGSYGGVALPGMGNMNLRQKHQKSYLHEGSGSMSMQSRSSHTGSSTVQEVHTIVGNGSISLLTTHSSPAYPRSPPHYEEDILQRRNNLVEEILQLSAE SYSVASSDSNTSSSDDDLYEFGDSSYEAAKSQNEEYLNPKAGGQLSSNPLKDQGHGIHHVMENDSYLNDSQTSISTKFLSSNSNDFSAGSHDGENAHFAN PEADLLEKGKNKRKPRRIVISLLENMVGRIGRPEKLNGNGDTCGAGLVDEQGEQIVCESDFHVTDKKQLHTNSFTTLDAVNVNGFSDDFIENYFNEKVAD SRINESCRNYMRCDCILEPESMYREREVVLLLSSEDKLYVLLIDVAFDGSGSILSLLGWHRVEDVREVLVGIGLQVVRVYIERGATYLFLTRSIEKSRQV LDILQVSGPCTTNNKCLLKSLEQVQAELFWQKICRGLKLSIFQYSMVLFRHRKNEEDSWLPRSLFVSGGHVLLCVEDLKQFRSSSVDASSPPYFLLDSCC SISDVSELVIEARESWFITLALQHAPKSLSSKSQKDIKTNDKDNEGSGSLTWKLKWFSKENLFNFVALLRAIHAGVAALPMLVTYTP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48540			Outer arm dynein light chain 1...		Potri.015G036300 [exp]	0	1
AT3G48195			Phox (PX) domain-containing pr...		Potri.015G078300 [exp]	10.00	0.7275
					Potri.014G065300 [exp]	18.70	0.8315
AT5G58190		ECT10	evolutionarily conserved C-ter...		Potri.006G079900 [exp]	19.28	0.7573
AT5G38600			Proline-rich spliceosome-assoc...		Potri.004G104400 [exp]	21.21	0.7661
					Potri.013G088025 [exp]	28.49	0.8102
					Potri.010G010851 [exp]	34.29	0.8074
AT4G00080		UNE11	unfertilized embryo sac 11, Pl...		Potri.014G067500 [exp]	38.06	0.8009
AT5G42870		ATPAH2	phosphatidic acid phosphohydro...		Potri.014G031000 [exp]	38.98	0.7431
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.006G010800 [exp]	42.42	0.8025
AT3G47570			Leucine-rich repeat protein ki...		Potri.011G102900 [exp]	42.50	0.7005

Compare expression of checked genes

Potri.015G036300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.