Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31840 696 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G19440 295 / 4e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G62910 280 / 1e-83 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63400 277 / 7e-83 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 280 / 6e-81 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 271 / 4e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 270 / 7e-80 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 268 / 4e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 268 / 7e-79 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 270 / 9e-79 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G105400 [exp] 336 / 2e-100 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 318 / 4e-97 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050400 [exp] 315 / 1e-96 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 307 / 1e-93 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.001G236800 [exp] 313 / 6e-93 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 306 / 7e-92 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050240 [exp] 300 / 3e-91 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 296 / 1e-89 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271400 [exp] 295 / 3e-89 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001284 [exp] 886 / 0 AT1G31840 645 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10009465 [exp] 863 / 0 AT1G31840 640 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10010410 [exp] 300 / 2e-88 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 291 / 2e-85 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008185 [exp] 292 / 5e-85 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 285 / 7e-83 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019524 [exp] 284 / 7e-83 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014247 [exp] 275 / 6e-82 AT1G62930 340 / 3e-109 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010407 [exp] 277 / 6e-80 AT5G59900 981 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034616 [exp] 273 / 1e-79 AT1G22960 617 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.015G036400.2 pacid=42774780 polypeptide=Potri.015G036400.2.p locus=Potri.015G036400 ID=Potri.015G036400.2.v4.1 annot-version=v4.1 ATGGTACTCAAAACTATGTTCCTTTGTAATTCATCCTTAATAATCTCAAAGATACTAGTTAATATCAAAAGCCCTTCTGCTATTTTCTCGTCTATTACTA AAAGTCACAATCATTGCTCTTATTATTACTTTTTCTCTAGCTCTTCTTCTTCTAAGAACAAGAACTGGAGCCTTATACACCAAATTGTTAAAGCCTTTCA CAACCAACAAAACCCTAAACCCTTAAACCCTATTCTTCTCTCTAAATTACAACTCTACCATGTACCAGACGTTATTATATCCCTTCAGCCTAAGCCCTTT TCGGCTATTAGATTCTTTGAGTGGGCTGAGAGCTTTTTCATTTCACCACTCTCTGCACCATCATTCTGTGCCCTCCTCCATGTCTTGCTTCAAAACCAAT TATTTAGTCGTGCTGCTTGTGTTTTCGATAAGTTTATCATGCAATTTGGAAATGATTATGACACTTTGGATGCCTTTCGTGATGGTTTTTGTGATTTGGA TTCGACAAACCATAGTGTTGTTTATGGGTTTTTGATTGAGAGTTACTGTCGAAAAGGGATGTTTGATAAATCTGTTGATATATTCATGCATGTTTGTGTA AAGGGTATTTTTGTTTCACCAAATGTGGTGTACTTGTTGTTGGGTTCTTTGATTGATTCACATTGTGTTGAAGTAATTGTGGATAAGTATGGTGAGCTGT GTTCAGCTATGAGAGAACAGCCTTTTAGTGTTTATGAATTTGTAATGAATAGGTTTATGAACAAGGGTGAGGTTGAAATGGGTTTGAGATTCCATAAAGC TTTGGTTCAAGGAGGTTTTGGTCTGGATATCATTACTTGCAATAAGATTTTAAAAGGTATTTGGATGCAAAATGATATAGGAGTTGCAGATGATTATTTT AATATGGTAGTGAGGATTGGCCCAAAACCAAATGTTGTCACATTTAGCACATTGATTGATGCATATTGCAAAGAGGGAAATTTGGATAAAGCATTTGTGC TTTTTGATGTTATGGCAGGGAATGGTGTGACACCTGACTTAATTGTCTACAGCATTCTTATTGATGGCCTGTTTAAGGCAGGGAGGCTGGAAGATGGACA AAGGCTCTTGTTGGTAGCATTAGATAAGGGTATCAAGTTGGATGTTGTTGGTTTCAGCTCAGCCATGGATGCATATGTGAAAATTGGGGATTTAGGGAGG GTAATTCAGATATATAAGAGAATGTTGAATGAAGGGATTTCACCTAATGTGGTCAGCTGCAGCATTCTTATAAAGGGGTTCTGTCAGAATGGTAGGATCT TAGAGGCTTGTGGACTGTTTGTTCAGATTCTGAAACTTGGTTTTGAGCCATCTATTTTAACTTACAGCGCTCTCATTGCTGGATTTTGCAAATCAGGAAA TCTAAGGGATGGGTTTTATTTATATGAGGATATGATAAAGAAGAGGTGTGAACCTGATACCATTGTTTACAGTGTTCTGATAAATGGTCTATGCAAACAA GGGTTGGTGGGTGATGCACTAAGATTCTTCTTTCAAGCTGTGAATAGGGGTTTAAGTCCCAATGTTTTTACTTTGAACACCTTGCTAGACAGCTTCTGTA GATTGAAATGCATAGTTGGTGCTATGAAGGTGTACTATCTAATGGGAATGTTAAATATAAAAGCAGACACAGTGACCTACACCATCCTTATTAAAGGCGC TGCTCAATTTGGTAGAGTTGATGAGGCACTGATGTTATTCTTCCAAATGCTCAAGAAGGATTTCAAACCAGATGTTATTACATATTGCACTCTGATTGAT GGACTTTGTAAGCTGAAAAAATCATCTGCAGGATTATGTATTTTTGATTTCATGTGCAAGAATGCTGTGGCCCCTGATATTGCAATTTATAATGTTCTCA TTAATATGCATTCTAGGGAAGGCCATTTGGAGGCTGCACTTGGACTCTTTGTCCATGTTGTTGAGAGAGGGCCAAAACCTGATGTTTTTACTTTCAACAC AATGATTTGCTGTTACTGCAATTTCAAAAGGTTAGATGATGCAGTTCAGCTTTTTGCGAAGATGACAAGTGAACAGCTCAGACCCAATGCCATTACTTTT ACCATACTGATTGATGCATTTTGTAGAGAAGGTAGAATGGATGATGCCATGTTGATGTTTTCCAAAATGCTGGAAGAGGGTCCCGAACCCAATTTGGTGA CATATAGTTGTTTGATTCATGGTTATTTCAAATCTCAAAGTATGATGGAAAGTGGCTTAAAGCTGTATAATGAGATGCTTGAAAACAATATTGCTCCAAA TATTGTCAGTTACAGCATTCTCATTGATGGTCTATGTAAAAGAGGTCTAATGAAGGAAGCGTCTTGTGCTTTTCGTTGTGCGCTAGACAAACATTTATTG CCTGATGTGATAGCTTATACGATTCTGATCCGTGGATATTGCAAGGTTGGGAGATTAACTGAAGCCATGATGTTTTATGACAATATGTTATTGAATAGAC TCACTCCAGACCGCTTCCTGGAAAGAACACTTGAGGAGTATCAACTTAAAAAAGCTGGAGCTAAACATTTGTGTGCTTGA
AA sequence Show only first row Show all	>Potri.015G036400.2 pacid=42774780 polypeptide=Potri.015G036400.2.p locus=Potri.015G036400 ID=Potri.015G036400.2.v4.1 annot-version=v4.1 MVLKTMFLCNSSLIISKILVNIKSPSAIFSSITKSHNHCSYYYFFSSSSSSKNKNWSLIHQIVKAFHNQQNPKPLNPILLSKLQLYHVPDVIISLQPKPF SAIRFFEWAESFFISPLSAPSFCALLHVLLQNQLFSRAACVFDKFIMQFGNDYDTLDAFRDGFCDLDSTNHSVVYGFLIESYCRKGMFDKSVDIFMHVCV KGIFVSPNVVYLLLGSLIDSHCVEVIVDKYGELCSAMREQPFSVYEFVMNRFMNKGEVEMGLRFHKALVQGGFGLDIITCNKILKGIWMQNDIGVADDYF NMVVRIGPKPNVVTFSTLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYSILIDGLFKAGRLEDGQRLLLVALDKGIKLDVVGFSSAMDAYVKIGDLGR VIQIYKRMLNEGISPNVVSCSILIKGFCQNGRILEACGLFVQILKLGFEPSILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLINGLCKQ GLVGDALRFFFQAVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLID GLCKLKKSSAGLCIFDFMCKNAVAPDIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPDVFTFNTMICCYCNFKRLDDAVQLFAKMTSEQLRPNAITF TILIDAFCREGRMDDAMLMFSKMLEEGPEPNLVTYSCLIHGYFKSQSMMESGLKLYNEMLENNIAPNIVSYSILIDGLCKRGLMKEASCAFRCALDKHLL PDVIAYTILIRGYCKVGRLTEAMMFYDNMLLNRLTPDRFLERTLEEYQLKKAGAKHLCA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31840			Tetratricopeptide repeat (TPR)...		Potri.015G036400 [exp]	0	1
AT5G35910			Polynucleotidyl transferase, r...		Potri.013G062800 [exp]	1.00	0.8611
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Potri.005G053700 [exp]	2.00	0.8567	Pt-SWP.2
AT5G52140			RING/U-box superfamily protein...		Potri.015G138700 [exp]	5.19	0.8196
AT3G46960			RNA helicase, ATP-dependent, S...		Potri.009G041200 [exp]	5.29	0.8304
AT1G25500			Plasma-membrane choline transp...		Potri.010G128100 [exp]	8.00	0.7802
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Potri.019G031700 [exp]	8.06	0.8332
AT1G48950			C3HC zinc finger-like (.1)		Potri.015G052400 [exp]	8.12	0.8154
AT3G17920			Outer arm dynein light chain 1...		Potri.012G045300 [exp]	9.79	0.8306
AT1G55040			zinc finger (Ran-binding) fami...		Potri.005G033000 [exp]	12.00	0.8024
AT5G05800			unknown protein		Potri.015G137800 [exp]	12.48	0.8126

Compare expression of checked genes

Potri.015G036400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.