Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SRP19.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48160 190 / 3e-63 signal recognition particle 19 kDa protein, putative / SRP19, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G045500 [exp] 249 / 5e-87 AT1G48160 188 / 1e-62 signal recognition particle 19 kDa protein, putative / SRP19, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011152 [exp] 191 / 7e-64 AT1G48160 176 / 1e-57 signal recognition particle 19 kDa protein, putative / SRP19, putative (.1) Lus10043056 [exp] 180 / 4e-59 AT1G48160 156 / 1e-49 signal recognition particle 19 kDa protein, putative / SRP19, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF01922 [poplar] [flax] SRP19 SRP19 protein
Representative CDS sequence Show only first row Show all	>Potri.015G036700.5 pacid=42775832 polypeptide=Potri.015G036700.5.p locus=Potri.015G036700 ID=Potri.015G036700.5.v4.1 annot-version=v4.1 ATGATGGATGGAGGAGTGCCAAATATAAAGAAATGGGTAGTCTTATATCCTGTTTACATTAACTCAAAGAAAACAATAGCTGAAGGAAGGCGGATTAGCG TGGAAAAGGCGTGTGAGAATCCCACTTGTGTTGAGATAGGTGATTGTTGTAGCCATCTCAAACTTCCTTTTGCAATTGAGATTGATAAGGCATATCCTCG AGATTTCATGCAAGTAGGTAGAGTGAGGGTATTACTGAAAAGAGAAGATGGGAGTTTATCTAATCCTGCTATTCCTTCCAGAAAACAGCTTATGCTCCAT GTTGCAGAATTGGTACCTAGACATCCTGGGAGGACCAAGAAGCAGGAGCCAGCATCCACATCAAATGCTGCAACATCCAAGTCTGGGAAGGGTGGGAAGA AGAAAAGATAG
AA sequence Show only first row Show all	>Potri.015G036700.5 pacid=42775832 polypeptide=Potri.015G036700.5.p locus=Potri.015G036700 ID=Potri.015G036700.5.v4.1 annot-version=v4.1 MMDGGVPNIKKWVVLYPVYINSKKTIAEGRRISVEKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQVGRVRVLLKREDGSLSNPAIPSRKQLMLH VAELVPRHPGRTKKQEPASTSNAATSKSGKGGKKKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48160			signal recognition particle 19...		Potri.015G036700 [exp]	0	1	Pt-SRP19.2
AT1G61150			LisH and RanBPM domains contai...		Potri.011G046200 [exp]	2.44	0.8790
AT2G28370			Uncharacterised protein family...		Potri.009G014600 [exp]	2.82	0.8817
AT1G16170			unknown protein		Potri.003G186400 [exp]	5.74	0.8390
AT2G39630			Nucleotide-diphospho-sugar tra...		Potri.008G055700 [exp]	6.32	0.8397
AT1G59650		CW14	Protein of unknown function (D...		Potri.010G040100 [exp]	8.24	0.8026	CW14.3
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Potri.002G082700 [exp]	8.71	0.8485
AT3G55380		UBC14	ubiquitin-conjugating enzyme 1...		Potri.008G053900 [exp]	10.19	0.8299	Pt-UBC7.1
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Potri.014G004900 [exp]	10.24	0.8400	SMH906
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Potri.003G166400 [exp]	10.29	0.7796
AT4G01710		ARPC5, CRK	CROOKED, ARP2/3 complex 16 kDa...		Potri.002G136500 [exp]	13.96	0.8278	CRK.2

Compare expression of checked genes

Potri.015G036700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.