Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17950 118 / 2e-33 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G045700 [exp] 289 / 7e-101 AT3G17950 120 / 3e-34 unknown protein Potri.006G084400 [exp] 40 / 0.0004 AT5G02440 78 / 5e-18 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006150 [exp] 137 / 1e-39 AT3G17950 132 / 1e-37 unknown protein Lus10027309 [exp] 119 / 9e-34 AT3G17950 121 / 7e-35 unknown protein Lus10025345 [exp] 42 / 0.0001 AT5G02440 67 / 6e-14 unknown protein Lus10024400 [exp] 42 / 0.0001 AT5G02440 88 / 1e-21 unknown protein Lus10023770 [exp] 41 / 0.0002 AT5G02440 97 / 2e-25 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G036900.1 pacid=42776498 polypeptide=Potri.015G036900.1.p locus=Potri.015G036900 ID=Potri.015G036900.1.v4.1 annot-version=v4.1 ATGTTAGATCCAACAAGCGATATGCTTCCACCTCCATCTTCCCCTACCAACTCCTCCGTATCCTCCTCCGATCTTGACACTGAGTCTACAGGTTCTTTTT TCCACGATAGAAGCACAACATTAGGCACTCTAATGGGCGTCACGTTCCCTGCCATCACTTTCAGAGCACCATCCCAGCACCTCCACCCCGCCGCCGCGTC CTTCGCCACCGACAACGTCGTGAACGGCGGAAGCCCCAGGAGGAACACCAAGAAGAGAAGGAACATGGCGGCTTCTGCTGTGGCGGAGCGGAGGAGACGG AGGTGGTGGAGCCTGTGCCGAGATGGAGGTGGGGCCAAGCCGGCTTCTTTGAGGGAGTTTCTGGAGGTGGAAAGGAGGTTCGGGGATGCCGCGTTGGAAC TTGAAGGCGTGATGGTGGCAGAGCACCCGAGGAACGGAGGAGTGAATGGACGGTTGTTGTTTGCTGATGGAAGGGTCTTGCCACCTGCCGATGTTGTCGA TGATGGTAGTTCATCGTCATCATCAACGGCCGGTGCTCATTGGCGGTTTCCGGTTTCACTAACTGGGATCTGTAGTGGTGGTGCTGGATAA
AA sequence Show only first row Show all	>Potri.015G036900.1 pacid=42776498 polypeptide=Potri.015G036900.1.p locus=Potri.015G036900 ID=Potri.015G036900.1.v4.1 annot-version=v4.1 MLDPTSDMLPPPSSPTNSSVSSSDLDTESTGSFFHDRSTTLGTLMGVTFPAITFRAPSQHLHPAAASFATDNVVNGGSPRRNTKKRRNMAASAVAERRRR RWWSLCRDGGGAKPASLREFLEVERRFGDAALELEGVMVAEHPRNGGVNGRLLFADGRVLPPADVVDDGSSSSSSTAGAHWRFPVSLTGICSGGAG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17950			unknown protein		Potri.015G036900 [exp]	0	1
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Potri.017G026100 [exp]	44.36	0.6293
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Potri.018G066500 [exp]	50.52	0.6221
AT3G61610			Galactose mutarotase-like supe...		Potri.002G167200 [exp]	55.38	0.6000
AT2G42070		ATNUDX23, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.006G192800 [exp]	67.67	0.5550
AT2G26210			Ankyrin repeat family protein ...		Potri.018G047000 [exp]	90.17	0.5803
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Potri.014G153800 [exp]	101.46	0.6090
AT3G11780			MD-2-related lipid recognition...		Potri.016G067800 [exp]	136.92	0.5570
AT3G61200			Thioesterase superfamily prote...		Potri.014G078900 [exp]	186.98	0.5622
AT1G25682			Family of unknown function (DU...		Potri.008G115700 [exp]	221.79	0.5433

Compare expression of checked genes

Potri.015G036900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.