Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18270 1931 / 0 ketose-bisphosphate aldolase class-II family protein (.1.2.3) AT4G20930 103 / 3e-23 6-phosphogluconate dehydrogenase family protein (.1) AT3G25530 99 / 2e-22 GR1, GLYR1, GHBDH, ATGHBDH glyoxylate reductase 1 (.1.2) AT4G29120 91 / 2e-19 6-phosphogluconate dehydrogenase family protein (.1) AT1G17650 91 / 7e-19 GR2, GLYR2 glyoxylate reductase 2 (.1) AT1G71180 87 / 3e-18 6-phosphogluconate dehydrogenase family protein (.1) AT1G71170 86 / 9e-18 6-phosphogluconate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G211500 [exp] 112 / 1e-26 AT1G71180 310 / 2e-105 6-phosphogluconate dehydrogenase family protein (.1) Potri.014G197900 [exp] 107 / 4e-25 AT3G25530 463 / 1e-166 glyoxylate reductase 1 (.1.2) Potri.018G088000 [exp] 92 / 1e-19 AT4G29120 463 / 8e-165 6-phosphogluconate dehydrogenase family protein (.1) Potri.001G465600 [exp] 91 / 3e-19 AT4G20930 507 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Potri.003G040800 [exp] 88 / 3e-18 AT1G17650 508 / 0.0 glyoxylate reductase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002140 [exp] 1228 / 0 AT1G18270 1147 / 0.0 ketose-bisphosphate aldolase class-II family protein (.1.2.3) Lus10008753 [exp] 902 / 0 AT1G18270 853 / 0.0 ketose-bisphosphate aldolase class-II family protein (.1.2.3) Lus10008754 [exp] 521 / 1e-172 AT1G18270 493 / 8e-163 ketose-bisphosphate aldolase class-II family protein (.1.2.3) Lus10001349 [exp] 116 / 6e-28 AT1G71180 335 / 4e-115 6-phosphogluconate dehydrogenase family protein (.1) Lus10023258 [exp] 100 / 5e-22 AT4G20930 479 / 4e-171 6-phosphogluconate dehydrogenase family protein (.1) Lus10012301 [exp] 93 / 3e-20 AT3G25530 434 / 3e-155 glyoxylate reductase 1 (.1.2) Lus10015612 [exp] 94 / 5e-19 AT1G17650 495 / 4e-172 glyoxylate reductase 2 (.1) Lus10037629 [exp] 89 / 1e-18 AT1G17650 486 / 9e-174 glyoxylate reductase 2 (.1) Lus10016077 [exp] 84 / 5e-16 AT3G57220 611 / 0.0 Glycosyl transferase family 4 protein (.1) Lus10012950 [exp] 79 / 2e-15 AT4G29120 456 / 3e-163 6-phosphogluconate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF01116 [poplar] [flax] F_bP_aldolase Fructose-bisphosphate aldolase class-II CL0063 [poplar] [flax] NADP_Rossmann PF03446 [poplar] [flax] NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase CL0063 [poplar] [flax] PF07005 [poplar] [flax] SBD_N Sugar-binding N-terminal domain CL0106 [poplar] [flax] 6PGD_C PF14833 [poplar] [flax] NAD_binding_11 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CL0106 [poplar] [flax] PF17042 [poplar] [flax] NBD_C Nucleotide-binding C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.015G037000.6 pacid=42776584 polypeptide=Potri.015G037000.6.p locus=Potri.015G037000 ID=Potri.015G037000.6.v4.1 annot-version=v4.1 ATGGCGACTGACGGTGCTGCGGTTGTTGGATTCGTCGGATTGGATGATTTGAGCTTAGACATGGCCGCTGCGCTTCTTCGTGCTGGCTACAAAGTTCAAG CTTTCGAGATAGATGAAACTTTGGTTGATAAATTTTTGAATCTAGGGGGAACGAGAAGTGCCAGCCTTATTGAGGCTGGGAAAGAAGTTGCAGCTTTGAT TGTTCTAATATCTCACGTGGATCAAATCAATGATGTATTTTTTGGCCAACAGGGTGTTTTGAAAGGATTGCAGAAAGGGGCACTTATCATCCTACGTTCA ACCATTCTGCCATCATACATCCAGAATCTAGAGAAACGTCTCAGAGATGAAGATTCGATGGCTCATCTAATAGAAGCATATGTCTCCAGGGGATTTTCTG AAGTCTTAAAGGGAAGAACCATGATTACATCCTCGGGAAGGTCTGAAGCTAATGCGAAGGCGCAGCCTATTCTTTCTGCAATGTCCGAAAAGCTTTTCAC CTTCGAAGGTGAAGTAGGCACTGGAAGTAAAATTAAAATGGTGAATGAGCTGCTTGAGGGCATTCATCTTGTTGCTGCACTGGAGGCGATTTCTCTTTGC ACTCAAGCTGGAATTCATCCATGGATAGTCTATGATATTATTTCCAATGCTGCTGGAAACTCATGGGTTTTCAAAAATCATATTCCCCAGTTTTTGAGAG GTGATACCAAGGTGCATTCCTACAGGACCGTGGTCCAAAATTTGGGTATTGTTTTGGATACGGCCAAATCGCTTATATTTCCTCTTCCACTTTTGTCTGT TGCTCATCAACAACTTATTCTTGGATCTTCATATGGTCAGGGTGATGATAGTGATGTCACATTTGTCAAGGTCTGGGGAAAGTTGCTTGGAGCAAATATT CAAGATGCAGCCAGTGCAGAACTCTACGAACCTGAGCAACTGGCTAGACAAATTGTTGCCAAATCTGTTGTCGTAAAGAGAATTGGTTTCATTGGTCTTG GAGCAATGGGATTTGGCATGGCAACTCACCTGTTGAAATCAAATTTCTGTGTTGTTGGTTATGATGTGTATAAACCAACTCTCACTCGATTTGCAAATGC TGGTGGTTTGATTGGCAACTCTCCAGCAGAAACATCTAAAGATGTTGATGTACTAGTAGTTATGGTCACAAATGAAACTCAAGCGGAGAGTGTTTTGTAT GGAGATCTAGGAGCAGTTGCAGCCTTACCATCAGGAGCATCTATCATCCTATCTTCTACAGTATCCCCTGCATTTGTGAGCCAACTGGAGCGACGCTTAC AAGGTGAAGGCAAGGGCTTGAAATTGGTGGATGCTCCTGTTTCTGGTGGTGTCAAGAGGGCCTCAGAAGGAACACTTACGATAATGGCTTCTGGTACTGA TGAAGCTCTTACATGTACCGGCTCAGTTCTCTCAGCATTAAGTGAGAAGCTTTATGTGATTAGAGGAGGTTGTGGGGCTGGAAGTGGTGTAAAGATGATT AATCAGTTGCTCGCTGGAGTTCATATAGCATCAGGGGCTGAGGCAATGGCGCTTGGAGCTCGATTAGGTCTCAATACAAGGATGCTGTTTGATTTCGTCA AGAACAGTGGAGGAACATCCTGGATGTTTGAGAATCGTGTTCCGCACATGTTGGACAACGATTATACACCGTATTCTGCACTCGATATCTTTGTGAAGGA TCTGGGAATTGTTTGCCGTGAATCGTCATCCCTTAAAGTTCCACTTCATATTGCAACTGTTGCACACCAACTATTCCTGGCAGGCTCTGCTGCTGGCTGG GGTCGGCAAGATGATGCAGGTGTCGTGAAGGTTTATGAGACCCTCACAGGTGTTAAAGTTGAAGGAACACTTCCTGTACTTAAGAAAGAAGTTGTCCTGC AGTCTCTTCCACCTGAGTGGCCCCTGGACCCCATTGATGATATTCATAGACTGAACCAGAGCAATTCAAAAACGTTGGTGGTTCTAGATGATGATCCAAC TGGAACTCAAACTGTTCATGATATTGAAGTATTAACAGAATGGAGTGTTGGGTCAATAGTTGAGCAATTTAGGAAAAAGCCTAAATGCTTTTTTATCTTG ACCAACTCCAGGTCATTGAGTTCTGAAAAGGCGAGTGCACTGATTAAAGATATCTGTGGAAACCTAAGCATAGCCGCTAAGTCAGTTGAGAATATTGATT ATACAGTAGTTTTGAGAGGCGATTCAACACTACGTGGTCATTTTCCAGAGGAAGCAGATGCAGCAGTTTCACTACTTGGTGAGATGGACGCATGGATCAT TTGCCCATTTTTTCTTCAAGGAGGGCGTTATACAATCAAAGATATACACTATGTTGCAGATTCTGATTGGCTTGTCCCTGCAGGGGACACAGAGTTCGCC AGAGATGCTTCTTTTGGCTACAAATCTTCAAACCTCCGTGAGTGGGTTGAGGAGAAAACTAGAGGCCGTATTCCTGCTAGCAGTGTTTCATCTATATCTA TCAATCTTTTGAGGAAAGGTGGGCCAGATGCTGTTTGTGATACTCTTTGCAACTTGCAGAAGGGTTCAACTTGCATAGTTAATGCAGCAAGTGATCGAGA CATGGCTGTATTTTCAGCTGGAATGATTCAGGCAGAATTAAGGGGGAAATCCTTTTTATGCCGCACTGCTGCTAGTTTTGTTTCTACCCGAATTGGAATT ATTCCAAAAGCTCCAATACTGCCAAAGGATCTAGGAATAACCAAAGAAAGAAAGGGCGGGCTTATAGTTGTGGGATCGTATGTTCCCAAAACAACAAAAC AGGTTGAAGAACTTAAATTACAATGTGGCCAGTTTTTAAAGAAACTAGAGGTTTCTGTTGATAAAATTGCCATGAAGTCATTAGAAGAGAGGGAGGAGGA AATCAATAGAGTGGCTGAGATGGCAAATTTGCTCCTTGGGGCTTGTAAAGACACTTTAATCATGACCAGTCGAGAACTCATTACTGGAAAAACTGCTTCT GAGAGCTTGGAAATCAACTTTAAGGTGAGCTCTGCTTTGGTGGAAATTGTGAGGCGGATATCAACAAGACCACGATACATTCTTGCAAAGGGTGGAATCA CGTCATCCGACCTAGCTACAAAAGCTCTAGAAGCAAAATGTGCCAAAGTAGTTGGACAAGCCCTAGCTGGCATTCCATTGTGGCAGCTTGGTCCAGAAAG TAGGCATCCAGGAGTTCCATACATTGTTTTCCCAGGTAATGTTGGTGACAGTAAAGCACTAGCTGATGTTGTGAAATCTTGGGCGCTTCCTTCCCGACTT TCATCAACAAAAGAACTTCTTCTTAACGCAGAGAGAGGTGGATATGCTGTTGGAGCATTTAATGTCTATAATATGGAAGGGGCTGAGGCTGTTGTAGCTG CAGCAGAGGAAGAAAATAGTCCTGCGATTCTACAGATTCATCCTAGTGCACTGAAGCAAGGAGGAATTCCATTGGTTGCTTGTTGTGTCTCTGCTGCTGA ACAGGCCAATGTTCCAATCACTGTTCATTTTGATCATGGAACTTCGAAGCAAGAGCTAGTTGAAGCTCTTGATTTGGGATTTGATTCATTAATGGTAGAC GGTTCACATCTTTCTCTCAAGGATAATATAGCATACACGAAGTATATATCACTTTTGGCCCACTCCAAAAACATGCTGGTGGAGGCTGAACTAGGGAGAT TGTCAGGGACAGAGGATGATTTGACTGTTGAAGATTACGAAGCAAGGCTGACTGATGTTAATCAGGCTGAAGAGTTCATTGATGAGACTGGTATAGATGC TTTGGCAGTGTGTATTGGGAATGTACATGGAAAGTACCCTGCAAGTGGTCCAAATCTCAGACTTGATTTGCTTAAGGATTTGCATGCCTTGAGTTCTAAG AAAGGTGTATTTCTGGTGCTGCATGGAGCATCTGGCTTGTCCGAGGAACTTATCAAGGCTAGTATTCAGCGGGGTGTGACGAAGTTCAATGTTAACACTG AGGTGCGCAACGCTTACATGAACTCACTAAGCAACCCCAAGAAAGATCTGGTCCATGTGATGGCTTCAGCAAAAGAAGCCATGAAAGCTGTGGTAGCAGA GAAGATGCGCTTGTTTGGTTCATCTGGAAAAGCATGA
AA sequence Show only first row Show all	>Potri.015G037000.6 pacid=42776584 polypeptide=Potri.015G037000.6.p locus=Potri.015G037000 ID=Potri.015G037000.6.v4.1 annot-version=v4.1 MATDGAAVVGFVGLDDLSLDMAAALLRAGYKVQAFEIDETLVDKFLNLGGTRSASLIEAGKEVAALIVLISHVDQINDVFFGQQGVLKGLQKGALIILRS TILPSYIQNLEKRLRDEDSMAHLIEAYVSRGFSEVLKGRTMITSSGRSEANAKAQPILSAMSEKLFTFEGEVGTGSKIKMVNELLEGIHLVAALEAISLC TQAGIHPWIVYDIISNAAGNSWVFKNHIPQFLRGDTKVHSYRTVVQNLGIVLDTAKSLIFPLPLLSVAHQQLILGSSYGQGDDSDVTFVKVWGKLLGANI QDAASAELYEPEQLARQIVAKSVVVKRIGFIGLGAMGFGMATHLLKSNFCVVGYDVYKPTLTRFANAGGLIGNSPAETSKDVDVLVVMVTNETQAESVLY GDLGAVAALPSGASIILSSTVSPAFVSQLERRLQGEGKGLKLVDAPVSGGVKRASEGTLTIMASGTDEALTCTGSVLSALSEKLYVIRGGCGAGSGVKMI NQLLAGVHIASGAEAMALGARLGLNTRMLFDFVKNSGGTSWMFENRVPHMLDNDYTPYSALDIFVKDLGIVCRESSSLKVPLHIATVAHQLFLAGSAAGW GRQDDAGVVKVYETLTGVKVEGTLPVLKKEVVLQSLPPEWPLDPIDDIHRLNQSNSKTLVVLDDDPTGTQTVHDIEVLTEWSVGSIVEQFRKKPKCFFIL TNSRSLSSEKASALIKDICGNLSIAAKSVENIDYTVVLRGDSTLRGHFPEEADAAVSLLGEMDAWIICPFFLQGGRYTIKDIHYVADSDWLVPAGDTEFA RDASFGYKSSNLREWVEEKTRGRIPASSVSSISINLLRKGGPDAVCDTLCNLQKGSTCIVNAASDRDMAVFSAGMIQAELRGKSFLCRTAASFVSTRIGI IPKAPILPKDLGITKERKGGLIVVGSYVPKTTKQVEELKLQCGQFLKKLEVSVDKIAMKSLEEREEEINRVAEMANLLLGACKDTLIMTSRELITGKTAS ESLEINFKVSSALVEIVRRISTRPRYILAKGGITSSDLATKALEAKCAKVVGQALAGIPLWQLGPESRHPGVPYIVFPGNVGDSKALADVVKSWALPSRL SSTKELLLNAERGGYAVGAFNVYNMEGAEAVVAAAEEENSPAILQIHPSALKQGGIPLVACCVSAAEQANVPITVHFDHGTSKQELVEALDLGFDSLMVD GSHLSLKDNIAYTKYISLLAHSKNMLVEAELGRLSGTEDDLTVEDYEARLTDVNQAEEFIDETGIDALAVCIGNVHGKYPASGPNLRLDLLKDLHALSSK KGVFLVLHGASGLSEELIKASIQRGVTKFNVNTEVRNAYMNSLSNPKKDLVHVMASAKEAMKAVVAEKMRLFGSSGKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18270			ketose-bisphosphate aldolase c...		Potri.015G037000 [exp]	0	1
AT5G47040		LON2	lon protease 2 (.1)		Potri.001G148400 [exp]	1.00	0.9150	LON.1
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.006G242100 [exp]	1.41	0.8981
AT1G20980	SBP	ATSPL14, SPL1R2...	squamosa promoter binding prot...		Potri.002G002400 [exp]	2.44	0.8578
AT3G21180		ATACA9, ACA9	autoinhibited Ca\(2+\)-ATPase ...		Potri.010G250800 [exp]	3.16	0.8212	ACA9.1
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.011G070900 [exp]	3.60	0.8175	Pt-TPS7.1
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.004G027800 [exp]	4.24	0.8366
AT1G34320			Protein of unknown function (D...		Potri.001G305800 [exp]	4.89	0.8535
AT3G62010			unknown protein		Potri.014G109900 [exp]	7.41	0.8180
AT1G69550			disease resistance protein (TI...		Potri.005G031899 [exp]	7.74	0.8404
AT2G17080			Arabidopsis protein of unknown...		Potri.009G142700 [exp]	8.71	0.7768

Compare expression of checked genes

Potri.015G037000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.