Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33730 1058 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G28180 728 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58510 332 / 2e-104 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT5G63120 327 / 5e-103 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G42520 326 / 4e-102 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58570 324 / 2e-101 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G55150 318 / 1e-100 DEA(D/H)-box RNA helicase family protein (.1) AT1G20920 323 / 7e-99 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G47330 319 / 3e-98 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G01540 295 / 2e-90 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G045800 [exp] 1144 / 0 AT2G33730 994 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G038300 [exp] 320 / 3e-101 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G007900 [exp] 323 / 5e-101 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G217800 [exp] 323 / 6e-101 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G083000 [exp] 311 / 8e-97 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G003600 [exp] 323 / 1e-96 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G194600 [exp] 315 / 3e-96 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G084600 [exp] 307 / 5e-95 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G071400 [exp] 311 / 8e-95 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015187 [exp] 1097 / 0 AT2G33730 1083 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031509 [exp] 836 / 0 AT2G33730 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016207 [exp] 328 / 3e-103 AT2G42520 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019484 [exp] 318 / 3e-99 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10000849 [exp] 317 / 3e-99 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015976 [exp] 317 / 4e-99 AT2G42520 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015627 [exp] 314 / 4e-99 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10037646 [exp] 313 / 1e-98 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015977 [exp] 313 / 1e-98 AT2G42520 738 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10043334 [exp] 316 / 2e-98 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.015G037200.1 pacid=42775368 polypeptide=Potri.015G037200.1.p locus=Potri.015G037200 ID=Potri.015G037200.1.v4.1 annot-version=v4.1 ATGAAACGCTCATTCGACGACATTGGCGTCTCCAAAACCCAAAGCAAACCTGTCTTCTTGACCAAAGCTCAACGCGAGCAATTAGCCCTTCAACGCCGCC AAGAAGAAATCGAACAACAAAAGAAACGCCAACAACTCCTCCTCTCCCAAACCCGCCCTTCCAACTCGGAGTCCGACAAACCCCCATCCAATTCTGACCG CCGTGACCAGCGTGACAGAGACAGAGAGCGCGAGATGGAGAGAGATAGGGAAAGGGAAAGGGAAAGGGAAAGGGAAAGGGAGCGGGAACGGGAACGCGAA CGCTCCTCGCGGCGCAACAGAGAACGCGAACGTGAAGAGGAAGCAAAGGCGCGTGAGCAAGCCAGGCTGGATAAATTAGCGGAGAGAGAGCGAGAGAAGG AGCTGGATGCGATTAAAGAGCAATATCTAGGGTCGAAAAAGCCTAAGAAGAGAGTAATAAAACCTAGTGAGAAGTTTCGCTTCTCTTTTGATTGGGAAAA CACGGAAGACACTTCTAGAGACATGAATATTTTGTATCAAAACCCTCATGAGGCACAACTTTTGTTCGGTCGAGGGTTTAGGGCTGGAATGGACCGGAGA GAGCAGAAAAAACTTGCTGCAAAGAATGAGAAGGATTTTAGAGACGAACTTCGAAAGAAAGAAGGTGTAGAGAAGAATCCAGAAGAGGCGGCTGCCCAAA AATTGAAGGAAGAAGCTGCTGATAGGTATGACACTTTTGATATGCGTGTTGATAGGCATTGGTCCGAGAAGAAGCTTGAAGAAATGACTGAGAGAGATTG GAGGATATTTAGGGAAGATTTTAATATTTCTTATAAGGGTTCCAAGATTCCGCGGCCCATGAGGAGTTGGGCAGAGAGTAAGTTGACTAGCGAGTTGTTG AAGGCAGTGGAGAGGGTAGTGTATAAGAAGCCGTCGCCTATTCAAATGGCAGCGATTCCACTGGGATTGCAACAACGGGATGTTATCGGGATTGCTGAGA CTGGTTCAGGTAAGACTTGTGCTTTTGTTTTGCCTATGTTGACTTATATTTCTAGGTTGCCTCCAATGAGTGAGGATAATGAGGCCGAAGGGCCTTATGC AGTTGTTATGGCACCTACTCGTGAGTTGGCGCAACAAATTGAGGACGAAACTGTCAAGTTTGCACATTATTTGGGTATTAAAGTAGTTTCTATTGTTGGT GGGCAGTCTATTGAAGAGCAAGGGTTTAGGATTAGGCAAGGTTGTGAGGTGGTTATTGCTACTCCAGGTCGTTTGCTTGATTGTTTGGAGAGGCGTTATG CTGTGTTGAATCAGTGTAATTATGTTGTGCTTGATGAGGCTGATAGGATGATTGATATGGGTTTTGAACCCCAGGTTATGGGAGTGTTGGATGCAATGCC ATCGAGCAATTTGAAGCCAGAAAATGAAGATGAAGAGCTTGATGAGAAAAAGATTTATCGCACCACTTATATGTTTAGTGCTACTATGCCACCTGCAGTG GAGCGGCTTGCAAGGAAGTACTTGAGAAACCCTGTTGTGGTCACTATTGGCACTGCTGGGAAGGCCACTGACTTGATATCCCAACATGTGATAATGACGA AGGAATCGGAGAAGTCCAGCAGGTTGCATAGATTGCTTGATGAACTTGGAGATAAGACTGCAATTGTTTTTGTTAACACTAAAAAGAATGCAGATATGGT GGCCAAGAATTTGGACAAGCATGGCTATCGTGTGACGACTTTGCATGGTGGGAAGTCCCAGGAGCAGAGGGAAATTAGCCTTGAAGGTTTTAGGACCAAA AGATACAATGTTCTTGTGGCAACAGATGTTGCAGGTCGTGGTATTGATATACCTGATGTGGCCCATGTCATTAATTATGATATGCCTGGAAATATTGAAA TGTATACTCACCGTATTGGACGAACAGGCCGTGCTGGAAAGACAGGTGTGGCTTCAACATTCTTAACTCTTGGGGACACAGATGTTTTTTATGATCTCAA GCAAATGCTTATCCAGAGTAACAGTTCTGTGCCTCCTGAGTTGGCTAGGCACGAGGCTTCAAAATTCAAGCCAGGAACAATTCCTGATAGACCTCCTAGA CGAAATGACACTGTTTTTGCTCACTGA
AA sequence Show only first row Show all	>Potri.015G037200.1 pacid=42775368 polypeptide=Potri.015G037200.1.p locus=Potri.015G037200 ID=Potri.015G037200.1.v4.1 annot-version=v4.1 MKRSFDDIGVSKTQSKPVFLTKAQREQLALQRRQEEIEQQKKRQQLLLSQTRPSNSESDKPPSNSDRRDQRDRDREREMERDRERERERERERERERERE RSSRRNREREREEEAKAREQARLDKLAEREREKELDAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNILYQNPHEAQLLFGRGFRAGMDRR EQKKLAAKNEKDFRDELRKKEGVEKNPEEAAAQKLKEEAADRYDTFDMRVDRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRSWAESKLTSELL KAVERVVYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTCAFVLPMLTYISRLPPMSEDNEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVG GQSIEEQGFRIRQGCEVVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAV ERLARKYLRNPVVVTIGTAGKATDLISQHVIMTKESEKSSRLHRLLDELGDKTAIVFVNTKKNADMVAKNLDKHGYRVTTLHGGKSQEQREISLEGFRTK RYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVASTFLTLGDTDVFYDLKQMLIQSNSSVPPELARHEASKFKPGTIPDRPPR RNDTVFAH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33730			P-loop containing nucleoside t...		Potri.015G037200 [exp]	0	1
AT1G27650	C3HZnF	ATU2AF35A	U2 snRNP auxiliary factor smal...		Potri.002G003000 [exp]	1.73	0.7896
AT3G12050			Aha1 domain-containing protein...		Potri.006G194400 [exp]	4.00	0.7728
AT1G24267			Protein of unknown function (D...		Potri.003G169200 [exp]	4.58	0.7299
AT3G48800			Sterile alpha motif (SAM) doma...		Potri.003G164600 [exp]	4.79	0.7982
AT2G18670			RING/U-box superfamily protein...		Potri.006G175700 [exp]	8.30	0.7243
AT5G19900			PRLI-interacting factor, putat...		Potri.001G011800 [exp]	8.83	0.7978
AT3G51940			unknown protein		Potri.001G021100 [exp]	9.48	0.7075
AT4G30480		TPR1, AtTPR1	tetratricopeptide repeat 1, Te...		Potri.018G100700 [exp]	14.28	0.7671
AT3G11460			Pentatricopeptide repeat (PPR)...		Potri.006G211400 [exp]	16.97	0.7039
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.005G192900 [exp]	21.49	0.7035	GBF4.2

Compare expression of checked genes

Potri.015G037200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.