Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74000 218 / 8e-69 SS3 strictosidine synthase 3 (.1) AT1G74020 207 / 1e-64 SS2 strictosidine synthase 2 (.1) AT1G74010 199 / 1e-61 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G57030 196 / 9e-60 Calcium-dependent phosphotriesterase superfamily protein (.1) AT2G41290 175 / 1e-51 SSL2 strictosidine synthase-like 2 (.1) AT3G57010 164 / 2e-47 Calcium-dependent phosphotriesterase superfamily protein (.1) AT5G22020 162 / 1e-46 Calcium-dependent phosphotriesterase superfamily protein (.1) AT1G08470 162 / 2e-46 SSL3 strictosidine synthase-like 3 (.1) AT3G59530 159 / 2e-45 LAP3 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT3G57020 153 / 2e-43 Calcium-dependent phosphotriesterase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G046200 [exp] 461 / 1e-164 AT1G74000 206 / 2e-64 strictosidine synthase 3 (.1) Potri.008G109966 [exp] 214 / 6e-67 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.T015518 [exp] 214 / 6e-67 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.006G040900 [exp] 198 / 2e-60 AT2G41290 381 / 4e-131 strictosidine synthase-like 2 (.1) Potri.016G037900 [exp] 193 / 1e-58 AT3G57030 523 / 0.0 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.016G037700 [exp] 188 / 2e-56 AT2G41290 402 / 3e-139 strictosidine synthase-like 2 (.1) Potri.001G214500 [exp] 175 / 2e-51 AT1G08470 628 / 0.0 strictosidine synthase-like 3 (.1) Potri.007G130700 [exp] 162 / 3e-46 AT3G59530 662 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.017G027600 [exp] 152 / 1e-42 AT3G59530 640 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009646 [exp] 345 / 9e-117 AT1G74020 207 / 7e-63 strictosidine synthase 2 (.1) Lus10009014 [exp] 348 / 5e-115 AT1G74020 201 / 8e-59 strictosidine synthase 2 (.1) Lus10009648 [exp] 282 / 1e-93 AT3G57030 192 / 4e-58 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10009649 [exp] 237 / 3e-76 AT1G74020 155 / 6e-44 strictosidine synthase 2 (.1) Lus10009015 [exp] 241 / 2e-73 AT3G57030 190 / 6e-54 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10009650 [exp] 223 / 2e-70 AT1G74010 156 / 3e-44 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10009651 [exp] 193 / 3e-60 AT3G57030 163 / 2e-48 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10013370 [exp] 157 / 6e-45 AT1G08470 520 / 0.0 strictosidine synthase-like 3 (.1) Lus10006331 [exp] 155 / 2e-44 AT3G57030 239 / 1e-76 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10008451 [exp] 154 / 2e-43 AT1G08470 600 / 0.0 strictosidine synthase-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF03088 [poplar] [flax] Str_synth Strictosidine synthase
Representative CDS sequence Show only first row Show all	>Potri.015G037700.1 pacid=42775390 polypeptide=Potri.015G037700.1.p locus=Potri.015G037700 ID=Potri.015G037700.1.v4.1 annot-version=v4.1 ATGGCTCTCCTCCGCCCAAGCACTAAAGCAGCTATGGTATCGATACTGTCCATTTTTGTCTTCTGTTTTCCTTCTACTGTTCTCTCTGAATCCTTCAGGC AAATCTTCTTGCCACCCACAGGCTTCGGCCCTGAATCCCTTGCCTTTGAATCTCCCGGTGGAGCCTTCTATACTGGTGTTAATGACGGTCGTGTTCTTAG ATACCAACCACCTACTGGCAGCTGGACATCCTTTGCCATTACCTCACCAAACCGGACGATAGCACTTTGCGATGGCACCACCGATCCCGATAAAGGACCT ATCTGCGGAAGGCCTTTGGGTTTGGCGTATAGTCCTTCCACAAAATTGCTCTACATAGCCGATGCATATTATGGACTCTTTGTTGCTGACTCAAATGGGA GACTTGCTAAACAAATTGCCACCAGTGCTGAAGGACAACGTTTTGTCGCTTGCAATGCTTTGGATATAGACCCTATCACAGGAAACATCTATTTTACAGA TGCTAGTGCTGTCTATGATCTAAGGAATTCCTCGAAAGCTCTTCTTGCCAATGACTCAACAGGAAGGTTAATGAAATATGACGTGAGGAAAAATCAAGTC ACCGTGTTATTGAGAAATCTTTCGGTGGCAGTGGGGGTTGCAGTCAGTAAAGATGGCGGGTTTGTCCTCGTCTCGGAGTTCGTTGGCAATAGGATTCGAC GATATTGGCTCACAGGACGGGATGCCGGGACTTCAGATATATTCCTAAGCAACCTTAACATTGTGAGGCCAAACAACATCAAGAGAACTAGTTTGGGCGA TTTTCGGATAGCAGCTGCAACTGTTAGACAAGATTCACAAACACTGGTGCCCATAAGAGTCAGAGTCGACGAGCATGGTAGAATCTCGGAGACTGTGTCT CTTGAGGCACAGTATGGAAGTACTCCCATCAGCGAAGTTCAACAGTCTGGTCTCTCGTTATATGTTAGCTCAAGGGGTGTGAATTTCGTTGGTGTTTATA CTCCTTAA
AA sequence Show only first row Show all	>Potri.015G037700.1 pacid=42775390 polypeptide=Potri.015G037700.1.p locus=Potri.015G037700 ID=Potri.015G037700.1.v4.1 annot-version=v4.1 MALLRPSTKAAMVSILSIFVFCFPSTVLSESFRQIFLPPTGFGPESLAFESPGGAFYTGVNDGRVLRYQPPTGSWTSFAITSPNRTIALCDGTTDPDKGP ICGRPLGLAYSPSTKLLYIADAYYGLFVADSNGRLAKQIATSAEGQRFVACNALDIDPITGNIYFTDASAVYDLRNSSKALLANDSTGRLMKYDVRKNQV TVLLRNLSVAVGVAVSKDGGFVLVSEFVGNRIRRYWLTGRDAGTSDIFLSNLNIVRPNNIKRTSLGDFRIAAATVRQDSQTLVPIRVRVDEHGRISETVS LEAQYGSTPISEVQQSGLSLYVSSRGVNFVGVYTP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74000		SS3	strictosidine synthase 3 (.1)		Potri.015G037700 [exp]	0	1
					Potri.006G031300 [exp]	5.29	0.8802
AT3G57770			Protein kinase superfamily pro...		Potri.005G106600 [exp]	5.91	0.8747
AT1G68840	AP2_ERF	EDF2, RAV2, RAP...	TEMPRANILLO 2, RELATED TO AP2 ...		Potri.014G068000 [exp]	6.92	0.8185
AT1G51400			Photosystem II 5 kD protein (....		Potri.009G052500 [exp]	7.00	0.8118
AT1G01710			Acyl-CoA thioesterase family p...		Potri.002G159150 [exp]	9.00	0.7364
					Potri.002G118950 [exp]	12.84	0.6490
					Potri.001G013101 [exp]	15.09	0.6742
AT1G01490			Heavy metal transport/detoxifi...		Potri.018G148900 [exp]	38.83	0.5577
AT1G65790		ARK1	receptor kinase 1 (.1)		Potri.004G024316 [exp]	51.08	0.6124
AT1G23880			NHL domain-containing protein ...		Potri.008G122450 [exp]	54.96	0.4858

Compare expression of checked genes

Potri.015G037700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.