Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrcGR1,Pt-GR.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54660 872 / 0 ATGR2, EMB2360, GR glutathione reductase (.1) AT3G24170 497 / 4e-172 ATGR1 glutathione-disulfide reductase (.1.2.3) AT3G16950 163 / 2e-43 PTLPD1, LPD1 lipoamide dehydrogenase 1 (.1.2) AT4G16155 162 / 8e-43 dihydrolipoyl dehydrogenases (.1) AT1G48030 154 / 7e-41 mtLPD1 mitochondrial lipoamide dehydrogenase 1 (.1.2) AT3G17240 149 / 4e-39 mtLPD2, LPD2 lipoamide dehydrogenase 2 (.1.2.3) AT3G09940 52 / 6e-07 MDAR2, ATMDAR3, MDHAR MONODEHYDROASCORBATE REDUCTASE 2, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, monodehydroascorbate reductase (.1.2) AT1G63940 52 / 7e-07 MDAR6 monodehydroascorbate reductase 6 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G178200 [exp] 518 / 2e-180 AT3G24170 848 / 0.0 glutathione-disulfide reductase (.1.2.3) Potri.001G050000 [exp] 517 / 3e-180 AT3G24170 857 / 0.0 glutathione-disulfide reductase (.1.2.3) Potri.010G142100 [exp] 161 / 1e-42 AT3G16950 895 / 0.0 lipoamide dehydrogenase 1 (.1.2) Potri.008G107600 [exp] 159 / 3e-42 AT3G16950 877 / 0.0 lipoamide dehydrogenase 1 (.1.2) Potri.008G100800 [exp] 156 / 2e-41 AT3G17240 868 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.010G151400 [exp] 122 / 2e-29 AT3G17240 817 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.001G099600 [exp] 56 / 5e-08 AT1G63940 793 / 0.0 monodehydroascorbate reductase 6 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018770 [exp] 883 / 0 AT3G54660 879 / 0.0 glutathione reductase (.1) Lus10024857 [exp] 882 / 0 AT3G54660 864 / 0.0 glutathione reductase (.1) Lus10011734 [exp] 511 / 2e-177 AT3G24170 863 / 0.0 glutathione-disulfide reductase (.1.2.3) Lus10000758 [exp] 464 / 9e-160 AT3G24170 776 / 0.0 glutathione-disulfide reductase (.1.2.3) Lus10017102 [exp] 153 / 3e-40 AT1G48030 918 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10037825 [exp] 152 / 7e-40 AT1G48030 922 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10037741 [exp] 152 / 1e-39 AT3G16950 928 / 0.0 lipoamide dehydrogenase 1 (.1.2) Lus10016877 [exp] 149 / 2e-38 AT3G16950 920 / 0.0 lipoamide dehydrogenase 1 (.1.2) Lus10032649 [exp] 143 / 1e-36 AT1G48030 892 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10043103 [exp] 141 / 4e-36 AT1G48030 889 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00070 [poplar] [flax] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.015G037800.2 pacid=42776523 polypeptide=Potri.015G037800.2.p locus=Potri.015G037800 ID=Potri.015G037800.2.v4.1 annot-version=v4.1 ATGGCGGCAGCAGCCTCTTCTCTGACAACACCAAAACTCACCTCCCCATCTCTCCAATCCCTCTACAGAAAACTCCCCCTTTCCTTCCCTCTCTCCCCCT CCTCTTCCTTCCTCCCTCTCCCCAAAACCCCAACCACCACCACCACTTTCCTCTCCTCCCGCCGCCCTCTCTCTCACCACCAGCGCCGCCATCTCACTAC TCGTGCGGAGGCCGAAAACGGCGCTGAACCTTCCCGACACTATGACTTCGACCTCTTCACTATCGGTGCTGGCAGTGGAGGCGTCCGAGCTTCTCGCTTC GCAGCCAATTTCGGCGCTTCTGTTGCCGTGTGTGAGCTTCCGTTCTCCACTATCTCTTCGGAGACAACCGGAGGCGTAGGCGGCACGTGTGTGCTTCGTG GATGTGTACCGAAGAAACTGCTTGTTTATGCGTCGAAATATGCTCATGAATTTGATGAGAGTCGGGGTTTTGGATGGAAGTATGACAGCGAACCACTTCA TGATTGGAATACTTTGATGGCTCACAAAAATGCCGAGTTGCAGCGCCTGACCGGTATTTATAAGCACATTCTCAATAACGCTGGTGTCACTTTAATTGAA GGCCGCGGGAAGATTGTCGATCCGCACACAGTTGATGTTGATGGAAAGCTCTATTCTGCACGGCACATACTTATTTCTGTTGGAGGACGCCCGTTCATTC CTGACATTCCTGGGAGTGAATACGCGATTGATTCTGATGCTGCACTTGATTTGCCATCTAAGCCGGAGAAAATCGCCATAGTTGGTGGAGGGTATATTGC GTTAGAATTTGCTGGAATTTTCAATGGCTTGAAGAGCGATGTTCATGTATTTATAAGGCAGAAAAAAGTATTAAGGGGATTTGATGAAGAGATCAGAGAT TTTGTTGCAGAGCAGATGTCTCTAAGAGGAATCGAGTTCCATACAGAGGAGTCACCTCAGGCTATTATTAAGTCAGCTGATGGTTCATTGTCACTGAAGA CCAACAAAGGAACAGTCGAAGGCTTCTCACATGTCATGTTTGCCACTGGACGTCGGCCTAATACAAAGAACTTGGGACTGGAGAGTTTGGGGGTAAAAAT GACCAACAATGGAGCAATAGAGGTTGATGAATACTCGTGCACCTCAGTTCCTTCCATTTGGGCAGTGGGAGATGTTACAGATAGGATAAATTTGACTCCT GTTGCTTTGATGGAAGGTGGGGCATTGGCAAAAACTCTCTTTCAGAATGAGCCAACAAAACCTGATTATAGAGCTGTTCCATCTGCTGTGTTTTCTCAGC CTCCAATTGGACAAGTTGGTCTTACGGAAGAACAGGCTACAAAAGAGTACGGTGATATTGATGTCTTCACAGCAAATTTCAGGCCTTTGAAGGCTACTCT CTCAGGGCTTCCAGATCGGGTCTTCATGAAACTAATAGTCTGTGCTAAGACAAACAAAGTTCTTGGGTTGAACATGTGTGGAGAAGATTCACCTGAAATC GTGCAGGGATTTGCAGTTGCAATCAAAGCTGGCTTGACCAAGGCAGACTTTGATTCCACAGTGGGTATTCACCCAACAGCAGCTGAGGAATTTGTTACAT TGAGGACTCCTACTAGAAAGATTCGAGAGCGTCCTCCAGCTGAGGGGAAGGCAGATCACGATGTTAAAGCAGCAGCAGGGGTTTAG
AA sequence Show only first row Show all	>Potri.015G037800.2 pacid=42776523 polypeptide=Potri.015G037800.2.p locus=Potri.015G037800 ID=Potri.015G037800.2.v4.1 annot-version=v4.1 MAAAASSLTTPKLTSPSLQSLYRKLPLSFPLSPSSSFLPLPKTPTTTTTFLSSRRPLSHHQRRHLTTRAEAENGAEPSRHYDFDLFTIGAGSGGVRASRF AANFGASVAVCELPFSTISSETTGGVGGTCVLRGCVPKKLLVYASKYAHEFDESRGFGWKYDSEPLHDWNTLMAHKNAELQRLTGIYKHILNNAGVTLIE GRGKIVDPHTVDVDGKLYSARHILISVGGRPFIPDIPGSEYAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEIRD FVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRRPNTKNLGLESLGVKMTNNGAIEVDEYSCTSVPSIWAVGDVTDRINLTP VALMEGGALAKTLFQNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQATKEYGDIDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGLNMCGEDSPEI VQGFAVAIKAGLTKADFDSTVGIHPTAAEEFVTLRTPTRKIRERPPAEGKADHDVKAAAGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Potri.015G037800 [exp]	0	1	PtrcGR1,Pt-GR.3
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Potri.002G143300 [exp]	1.73	0.9775
AT5G53170		FTSH11	FTSH protease 11 (.1)		Potri.012G000700 [exp]	2.44	0.9751
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Potri.006G119800 [exp]	2.44	0.9745	CYP97C4
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Potri.014G126700 [exp]	7.00	0.9621	RSH1.2
AT2G37220			RNA-binding (RRM/RBD/RNP motif...		Potri.006G127200 [exp]	7.34	0.9616	RBP29.2
AT5G44000			Glutathione S-transferase fami...		Potri.014G192300 [exp]	7.34	0.9548
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Potri.002G000200 [exp]	7.74	0.9611
AT1G32200		ACT1, ATS1	ACYLTRANSFERASE 1, phospholipi...		Potri.001G136600 [exp]	7.93	0.9511
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Potri.014G066500 [exp]	8.36	0.9662
AT3G19830		NTMCTYPE5.2 ,NT...	Calcium-dependent lipid-bindin...		Potri.010G170300 [exp]	9.16	0.9434

Compare expression of checked genes

Potri.015G037800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.